def test_get_weights_5(self):
sequence_file = SequenceFile('test')
for s in [
Sequence('foo', 'AAAAAAA'),
Sequence('bar', 'AA-ACA-'),
Sequence('cho', 'C-CAA--'),
Sequence('baz', 'CCCCCCC')
]:
sequence_file.add(s)
weights = sequence_file.get_weights(identity=0.6)
self.assertEqual(weights, [1.0, 1.0, 1.0, 1.0])
def test_get_weights_1(self):
sequence_file = SequenceFile('test')
for s in [
Sequence('foo', 'AAAAAAA'),
Sequence('bar', 'AAAAAAA'),
Sequence('cho', 'AAAAAAA'),
Sequence('baz', 'AAAAAAA')
]:
sequence_file.add(s)
weights = sequence_file.get_weights(identity=0.7)
self.assertEqual(weights, [0.25, 0.25, 0.25, 0.25])
def test_get_weights_5(self):
sequence_file = SequenceFile("test")
for s in [
Sequence("foo", "AAAAAAA"),
Sequence("bar", "AA-ACA-"),
Sequence("cho", "C-CAA--"),
Sequence("baz", "CCCCCCC"),
]:
sequence_file.add(s)
weights = sequence_file.get_weights(identity=0.6)
self.assertEqual(weights, [1.0, 1.0, 1.0, 1.0])
def test_get_weights_2(self):
sequence_file = SequenceFile("test")
for s in [
Sequence("foo", "AAAAAAA"),
Sequence("bar", "AAAAAAA"),
Sequence("cho", "AAAAAAA"),
Sequence("baz", "CCCCCCC"),
]:
sequence_file.add(s)
weights = sequence_file.get_weights(identity=0.7)
self.assertEqual(weights, [0.3333333333333333, 0.3333333333333333, 0.3333333333333333, 1.0])
def test_get_weights_6(self):
sequence_file = SequenceFile("test")
for s in [
Sequence("foo", "AAAAAAA"),
Sequence("bar", "AA-ACA-"),
Sequence("cho", "AAADCAA"),
Sequence("doo", "C-CAA--"),
Sequence("miu", "CCCCCCC"),
Sequence("nop", "AAAAAAB"),
]:
sequence_file.add(s)
weights = sequence_file.get_weights(identity=0.6)
self.assertEqual(weights, [0.3333333333333333, 1.0, 0.5, 1.0, 1.0, 0.5])
def test_get_weights_6(self):
sequence_file = SequenceFile('test')
for s in [
Sequence('foo', 'AAAAAAA'),
Sequence('bar', 'AA-ACA-'),
Sequence('cho', 'AAADCAA'),
Sequence('doo', 'C-CAA--'),
Sequence('miu', 'CCCCCCC'),
Sequence('nop', 'AAAAAAB')
]:
sequence_file.add(s)
weights = sequence_file.get_weights(identity=0.6)
self.assertEqual(weights,
[0.3333333333333333, 1.0, 0.5, 1.0, 1.0, 0.5])