def createOutput(self):
import glob
levelFiles = glob.glob(self._getExtraPath("results_classes_level*.xmd"))
if levelFiles:
levelFiles.sort()
lastLevelFile = levelFiles[-1]
setOfClasses = self._createSetOfClassesVol()
setOfClasses.setImages(self.inputVolumes.get())
readSetOfClassesVol(setOfClasses, lastLevelFile)
self._defineOutputs(outputClasses=setOfClasses)
self._defineSourceRelation(self.inputVolumes, self.outputClasses)
if self.generateAligned.get():
setOfVolumes = self._createSetOfVolumes()
fnAligned = self._getExtraPath("results_aligned.xmd")
self.runJob(
"xmipp_metadata_selfile_create",
"-p %s -o %s -s" % (self._getExtraPath("results_aligned.stk"), fnAligned),
)
md = MetaData(fnAligned)
md.addItemId()
md.write(fnAligned)
readSetOfVolumes(fnAligned, setOfVolumes)
volumeList = self.inputVolumes.get()
setOfVolumes.setSamplingRate(volumeList.getSamplingRate())
self._defineOutputs(alignedVolumes=setOfVolumes)
self._defineTransformRelation(self.inputVolumes, self.alignedVolumes)
def createOutput(self):
import glob
levelFiles=glob.glob(self._getExtraPath("results_classes_level*.xmd"))
if levelFiles:
levelFiles.sort()
lastLevelFile=levelFiles[-1]
setOfClasses = self._createSetOfClassesVol()
setOfClasses.setImages(self.inputVolumes.get())
readSetOfClassesVol(setOfClasses,lastLevelFile)
self._defineOutputs(outputClasses=setOfClasses)
self._defineSourceRelation(self.inputVolumes, self.outputClasses)
if self.generateAligned:
setOfVolumes = self._createSetOfVolumes()
fnAligned = self._getExtraPath('results_aligned.xmd')
readSetOfVolumes(fnAligned,setOfVolumes)
volumeList = self.inputVolumes.get()
setOfVolumes.setSamplingRate(volumeList.getSamplingRate())
self._defineOutputs(alignedVolumes=setOfVolumes)
self._defineTransformRelation(self.inputVolumes, self.alignedVolumes)
def createOutput(self):
import glob
levelFiles = glob.glob(
self._getExtraPath("results_classes_level*.xmd"))
if levelFiles:
levelFiles.sort()
lastLevelFile = levelFiles[-1]
setOfClasses = self._createSetOfClassesVol()
setOfClasses.setImages(self.inputVolumes.get())
readSetOfClassesVol(setOfClasses, lastLevelFile)
self._defineOutputs(outputClasses=setOfClasses)
self._defineSourceRelation(self.inputVolumes, self.outputClasses)
if self.generateAligned:
setOfVolumes = self._createSetOfVolumes()
fnAligned = self._getExtraPath('results_aligned.xmd')
readSetOfVolumes(fnAligned, setOfVolumes)
volumeList = self.inputVolumes.get()
setOfVolumes.setSamplingRate(volumeList.getSamplingRate())
self._defineOutputs(alignedVolumes=setOfVolumes)
self._defineTransformRelation(self.inputVolumes,
self.alignedVolumes)
