Пример #1
0
    def test_read(self):
        f = testdata_stream("genbank/cox2.gb")
        seqs = genbank_io.read(f)

        self.assertEqual(len(seqs), 5)
        self.assertEqual(len(seqs[1]), 210)

        f.seek(0)
        seqs = seq_io.read(f)
        self.assertEqual(len(seqs), 5)
        self.assertEqual(len(seqs[1]), 210)
        f.close()

        f = testdata_stream('genbank/NT_019265.gb')
        seqs = genbank_io.read(f)
        self.assertEqual(len(seqs), 0)
        f.close()
Пример #2
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 def test_parse(self) :
     for f in examples():
         #print f.name
         seqs = genbank_io.read(f)
Пример #3
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 def test_parse(self):
     for f in examples():
         # print f.name
         seqs = genbank_io.read(f)
         f.close()