def delete(genoname, inbredsetid):
genofreezeid = datastructure.get_genofreeze_byinbredsetid(inbredsetid)[0]
geno = get_geno(inbredsetid, genoname)
if geno:
genoid = geno[0]
else:
return 0
delete_genodata_genoid(genoid, genofreezeid)
return delete_genoxref(genoid, genofreezeid)
def fetch_parameters(config):
config_dic = {}
config_dic['inbredsetid'] = config.get('config', 'inbredsetid')
config_dic["speciesid"] = datastructure.get_species(config_dic['inbredsetid'])[0]
config_dic['genofreezeid'] = datastructure.get_genofreeze_byinbredsetid(config_dic['inbredsetid'])[0]
config_dic['dataid'] = datastructure.get_nextdataid_genotype()
config_dic['genofile'] = config.get('config', 'genofile')
print("config dictionary:")
for k, v in config_dic.items():
print("\t%s: %s" % (k, v))
return config_dic
def fetch_parameters(config):
config_dic = {}
config_dic['inbredsetid'] = config.get('config', 'inbredsetid')
config_dic["speciesid"] = datastructure.get_species(config_dic['inbredsetid'])[0]
config_dic['genofreezeid'] = datastructure.get_genofreeze_byinbredsetid(config_dic['inbredsetid'])[0]
config_dic['dataid'] = datastructure.get_nextdataid_genotype()
config_dic['genofile'] = config.get('config', 'genofile')
print("config dictionary:")
for k, v in config_dic.items():
print("\t%s: %s" % (k, v))
return config_dic
def fetch_parameters(config):
# variables
params = {}
params['inbredsetid'] = config.get('config', 'inbredsetid')
species = datastructure.get_species(params['inbredsetid'])
params["speciesid"] = species[0]
genofreeze = datastructure.get_genofreeze_byinbredsetid(params['inbredsetid'])
params['genofreezeid'] = genofreeze[0]
params['dataid'] = datastructure.get_nextdataid_genotype()
params['genofile'] = config.get('config', 'genofile')
return params
