def __cmd_line_helper__(self, cmdline_str: str):
env_args = {"--num-workers": num_workers()}
for arg, value in env_args.items():
if arg in cmdline_str:
continue
cmdline_str = f"{arg} {value} {cmdline_str}"
cmdline_input = cmdline_str.strip().split()
parse_args(cmdline_input)
def execute(self):
try:
load_path = self.manager[self.__LOAD_PATH_KEY].get()
if not load_path:
raise ValueError("Load path not defined")
preferences_str = self.preferences.get_cmd_line_str().strip()
tissue_str = ""
for c, t in enumerate(self.manager[self.__TISSUES_KEY]):
if t.get():
tissue_str += "--%s " % knee.SUPPORTED_TISSUES[c].STR_ID
tissue_str = tissue_str.strip()
if not tissue_str:
raise ValueError("No tissues selected")
qv_str = ""
for c, qv in enumerate(
self.manager[self.__QUANTITATIVE_VALUES_KEY]):
if qv.get():
qv_str += "--%s " % SUPPORTED_QUANTITATIVE_VALUES[
c].name.lower()
qv_str = qv_str.strip()
if not qv_str:
raise ValueError("No quantitative values selected")
pid = self.manager[self.__PID_KEY].get()
medial_to_lateral = self.manager[
self.__MEDIAL_TO_LATERAL_ORIENTATION_KEY].get()
if not pid:
raise ValueError("No PID was provided")
# analysis string
str_f = "--l %s %s knee %s --pid %s %s %s" % (
load_path,
preferences_str,
tissue_str,
pid,
"--ml" if medial_to_lateral else "",
qv_str,
)
str_f = str_f.strip()
parse_args(str_f.split())
except Exception as e:
tk.messagebox.showerror(str(type(e)), e.__str__())
def execute(self):
try:
save_path = self.manager[self.__SAVE_PATH_KEY].get()
if not save_path:
raise ValueError("Save path not defined")
action_str = self.scan_reader.get_cmd_line_str().strip()
if not action_str:
raise ValueError("No action selected")
preferences_str = self.preferences.get_cmd_line_str().strip()
source = "d"
if self.manager[self.__DATA_KEY].get() == self.__LOAD_PATH_KEY:
source = "l"
tissue_str = ""
for c, t in enumerate(self.manager[self.__TISSUES_KEY]):
if t.get():
tissue_str += "--%s " % knee.SUPPORTED_TISSUES[c].STR_ID
tissue_str = tissue_str.strip()
if not tissue_str:
raise ValueError("No tissues selected")
ignore_ext = self.manager[self.__IGNORE_EXTENSION_KEY].get()
str_f = "--%s %s --s %s %s %s %s %s %s" % (
source,
self.manager[self.__DATA_PATH_KEY].get(),
save_path,
preferences_str,
"--ignore_ext" if ignore_ext else "",
self.manager[self.__SCAN_KEY].get(),
tissue_str,
action_str,
)
logging.info("CMD LINE INPUT: %s" % str_f)
parse_args(str_f.split())
except Exception as e:
tk.messagebox.showerror(str(type(e)), e.__str__())
def __cmd_line_helper__(self, cmdline_str: str):
cmdline_input = cmdline_str.strip().split()
parse_args(cmdline_input)