def __init__(self, verbose=True, download=True, path='submissions',
**kargs):
""".. rubric:: constructor
:param path: path to a directory containing submissions
:return:
"""
Challenge.__init__(self, 'D7C1', verbose, download, **kargs)
self.sub_challenges = ['parameter', 'topology', 'timecourse']
self.path = path
teams = glob.glob(path + os.sep +'*')
self.teams = [this for this in teams if os.path.isdir(this) is True]
self.N = len(self.teams)
self.distances = np.zeros((self.N, 4))
self.pvalues = np.zeros((self.N, 4))
self.scores = {}
self._load_gold_standard()
#self.load_submissions()
#self.compute_score_distance_model1()
#self.compute_score_parameter_prediction_model1()
#self.compute_score_topology()
# data structure to store null distances
self.rdistance_pred1 = []
self.rdistance_param1 = []
def __init__(self, challenge, client=None):
""".. rubric:: constructor
:param str challenge: nickname of a challenge (e.g., D5C1)
To automatically connect to synapse, create a file called .synapseConfig with this
content::
[authentication]
username: email
password: password
"""
Challenge.__init__(self, challenge_name=challenge)
Login.__init__(self, client=client)
def __init__(self, challenge, client=None, username=None, password=None):
""".. rubric:: constructor
:param str challenge: alias of a challenge (e.g., D5C1)
To automatically connect to synapse, create a file
called .synapseConfig with this content::
[authentication]
username: email
password: password
"""
Challenge.__init__(self, challenge_name=challenge)
# Login provides the synapse client. See client attribute
warnings.filterwarnings("ignore")
Login.__init__(self, client=client, username=username,
password=password)
warnings.resetwarnings()
def __init__(self, challenge, client=None, username=None, password=None):
""".. rubric:: constructor
:param str challenge: alias of a challenge (e.g., D5C1)
To automatically connect to synapse, create a file
called .synapseConfig with this content::
[authentication]
username: email
password: password
"""
Challenge.__init__(self, challenge_name=challenge)
# Login provides the synapse client. See client attribute
warnings.filterwarnings("ignore")
Login.__init__(self,
client=client,
username=username,
password=password)
warnings.resetwarnings()
def __init__(self):
Challenge.__init__(self, "D3C1")
# read data required for the scoring.
self._init()
def __init__(self, filename, verboseR=True):
Challenge.__init__(self, challenge_name='D8C2')
RTools.__init__(self, verboseR=verboseR)
self.filename = filename
self._path2data = os.path.split(os.path.abspath(__file__))[0]
def __init__(self, filename, verboseR=True):
Challenge.__init__(self, challenge_name='D8C2')
RTools.__init__(self, verboseR=verboseR)
self.filename = filename
def __init__(self, filename, verboseR=True):
Challenge.__init__(self, challenge_name='D8C2')
RTools.__init__(self, verboseR=verboseR)
self.filename = filename
def __init__(self, verbose=True, download=True, **kargs):
Challenge.__init__(self, "D3C1", verbose, download, **kargs)
# read data required for the scoring.
self._init()
def __init__(self, name, verbose=True):
super(Layout, self).__init__(level=verbose)
self.name = name
# check the name is correct
from dreamtools.core.challenge import Challenge
c = Challenge(self.name)
def __init__(self):
Challenge.__init__(self, "D3C1")
self._path2data = os.path.split(os.path.abspath(__file__))[0]
# read data required for the scoring.
self._init()
def __init__(self, verbose=True, download=True, **kargs):
Challenge.__init__(self, "D3C1", verbose, download, **kargs)
# read data required for the scoring.
self._init()
