def __assert_output_format_is(expected, output, input_extensions=[], param_context=[], add_collection=False):
inputs = {}
last_ext = "data"
i = 1
for name, ext in input_extensions:
hda = model.HistoryDatasetAssociation(extension=ext)
hda.metadata.random_field = str(i) # Populate a random metadata field for testing
inputs[name] = hda
last_ext = ext
i += 1
input_collections = {}
if add_collection:
hda_forward = model.HistoryDatasetAssociation(extension="txt")
hda_reverse = model.HistoryDatasetAssociation(extension="txt")
c1 = model.DatasetCollection(collection_type="pair")
hc1 = model.HistoryDatasetCollectionAssociation(collection=c1, name="HistoryCollectionTest1")
dce1 = model.DatasetCollectionElement(collection=c1, element=hda_forward, element_identifier="forward", element_index=0)
dce2 = model.DatasetCollectionElement(collection=c1, element=hda_reverse, element_identifier="reverse", element_index=1)
c1.elements = [dce1, dce2]
input_collections["hdcai"] = [(hc1, False)]
actual_format = determine_output_format(output, param_context, inputs, input_collections, last_ext)
assert actual_format == expected, "Actual format %s, does not match expected %s" % (actual_format, expected)
def __assert_output_format_is( expected, output, input_extensions=[], param_context=[], add_collection=False ):
inputs = {}
last_ext = "data"
i = 1
for name, ext in input_extensions:
hda = model.HistoryDatasetAssociation(extension=ext)
hda.metadata.random_field = str(i) # Populate a random metadata field for testing
inputs[ name ] = hda
last_ext = ext
i += 1
input_collections = {}
if add_collection:
hda_forward = model.HistoryDatasetAssociation(extension="txt")
hda_reverse = model.HistoryDatasetAssociation(extension="txt")
c1 = model.DatasetCollection(collection_type="pair")
hc1 = model.HistoryDatasetCollectionAssociation(collection=c1, name="HistoryCollectionTest1")
dce1 = model.DatasetCollectionElement(collection=c1, element=hda_forward, element_identifier="forward", element_index=0)
dce2 = model.DatasetCollectionElement(collection=c1, element=hda_reverse, element_identifier="reverse", element_index=1)
c1.elements = [dce1, dce2]
input_collections["hdcai"] = [(hc1, False)]
actual_format = determine_output_format( output, param_context, inputs, input_collections, last_ext )
assert actual_format == expected, "Actual format %s, does not match expected %s" % (actual_format, expected)
def __assert_output_format_is( expected, output, input_extensions=[], param_context=[] ):
inputs = {}
last_ext = "data"
i = 1
for name, ext in input_extensions:
hda = model.HistoryDatasetAssociation(extension=ext)
hda.metadata.random_field = str(i) # Populate a random metadata field for testing
inputs[ name ] = hda
last_ext = ext
i += 1
actual_format = determine_output_format( output, param_context, inputs, last_ext )
assert actual_format == expected, "Actual format %s, does not match expected %s" % (actual_format, expected)
def __assert_output_format_is(expected,
output,
input_extensions=[],
param_context=[]):
inputs = {}
last_ext = "data"
for name, ext in input_extensions:
hda = model.HistoryDatasetAssociation(extension=ext)
inputs[name] = hda
last_ext = ext
actual_format = determine_output_format(output, param_context, inputs,
last_ext)
assert actual_format == expected, "Actual format %s, does not match expected %s" % (
actual_format, expected)
def __assert_output_format_is(expected,
output,
input_extensions=[],
param_context=[]):
inputs = {}
last_ext = "data"
i = 1
for name, ext in input_extensions:
hda = model.HistoryDatasetAssociation(extension=ext)
hda.metadata.random_field = str(
i) # Populate a random metadata field for testing
inputs[name] = hda
last_ext = ext
i += 1
actual_format = determine_output_format(output, param_context, inputs,
last_ext)
assert actual_format == expected, "Actual format %s, does not match expected %s" % (
actual_format, expected)
