Пример #1
0
def test_cat_to_file():
    target = results_dir + "/catted.fastq"
    reads_1 = files.open(testfiles["reads_1.fastq"])
    reads_2 = files.open(testfiles["reads_2.fastq"])
    out = gt.OutputFile(target)
    gt.cat([reads_1, reads_2]).write_stream(out)
    c = 0
    ids = []
    with open(target) as f:
        for l in f:
            if c % 4 == 0:
                ids.append(l.strip())
            c += 1
    assert len(set(ids)) == 20000
Пример #2
0
def test_cat_to_file():
    target = results_dir + "/catted.fastq"
    reads_1 = files.open(testfiles["reads_1.fastq"])
    reads_2 = files.open(testfiles["reads_2.fastq"])
    out = gt.OutputFile(target)
    gt.cat([reads_1, reads_2]).write_stream(out)
    c = 0
    ids = []
    with open(target) as f:
        for l in f:
            if c % 4 == 0:
                ids.append(l.strip())
            c += 1
    assert len(set(ids)) == 20000
Пример #3
0
def cat(reads):
    return gt.cat(reads)
Пример #4
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def cat(reads):
    return gt.cat(reads)