def test_ScalarView_mpl_default():
mesh = Mesh()
mesh.load(domain_mesh)
mesh.refine_element(0)
shapeset = H1Shapeset()
pss = PrecalcShapeset(shapeset)
# create an H1 space
space = H1Space(mesh, shapeset)
space.set_uniform_order(5)
space.assign_dofs()
# initialize the discrete problem
wf = WeakForm(1)
set_forms(wf)
solver = DummySolver()
sys = LinSystem(wf, solver)
sys.set_spaces(space)
sys.set_pss(pss)
# assemble the stiffness matrix and solve the system
sys.assemble()
A = sys.get_matrix()
b = sys.get_rhs()
from scipy.sparse.linalg import cg
x, res = cg(A, b)
sln = Solution()
sln.set_fe_solution(space, pss, x)
view = ScalarView("Solution")
view.show(sln, show=False, method="contour")
def test_ScalarView_mpl_default():
mesh = Mesh()
mesh.load(domain_mesh)
mesh.refine_element(0)
shapeset = H1Shapeset()
pss = PrecalcShapeset(shapeset)
# create an H1 space
space = H1Space(mesh, shapeset)
space.set_uniform_order(5)
space.assign_dofs()
# initialize the discrete problem
wf = WeakForm(1)
set_forms(wf)
solver = DummySolver()
sys = LinSystem(wf, solver)
sys.set_spaces(space)
sys.set_pss(pss)
# assemble the stiffness matrix and solve the system
sys.assemble()
A = sys.get_matrix()
b = sys.get_rhs()
from scipy.sparse.linalg import cg
x, res = cg(A, b)
sln = Solution()
sln.set_fe_solution(space, pss, x)
view = ScalarView("Solution")
view.show(sln, show=False, method="contour")
shapeset = H1Shapeset()
pss = PrecalcShapeset(shapeset)
space = H1Space(mesh, shapeset)
set_bc(space)
space.set_uniform_order(1)
wf = WeakForm(1)
set_forms(wf)
sln = Solution()
rsln = Solution()
solver = DummySolver()
view = ScalarView("Solution")
iter = 0
while 1:
space.assign_dofs()
sys = LinSystem(wf, solver)
sys.set_spaces(space)
sys.set_pss(pss)
sys.assemble()
sys.solve_system(sln)
if interactive_plotting:
view.show(sln)
rsys = RefSystem(sys)
rsys.assemble()
# Create the x- and y- displacement space using the default H1 shapeset
xdisp = H1Space(mesh, P_INIT)
ydisp = H1Space(mesh, P_INIT)
set_bc(xdisp, ydisp)
# Initialize the weak formulation
wf = WeakForm(2)
set_forms(wf)
# Initialize the linear system.
ls = LinSystem(wf)
ls.set_spaces(xdisp, ydisp)
# Assemble and solve the matrix problem
xsln = Solution()
ysln = Solution()
ls.assemble()
ls.solve_system(xsln, ysln, lib="scipy")
# Visualize the solution
view = ScalarView("Von Mises stress [Pa]", 50, 50, 1200, 600)
E = float(200e9)
nu = 0.3
l = (E * nu) / ((1 + nu) * (1 - 2 * nu))
mu = E / (2 * (1 + nu))
stress = VonMisesFilter(xsln, ysln, mu, l)
view.show(stress)
# Visualize the mesh
mesh.plot(space=xdisp)
def calc(threshold=0.3,
strategy=0,
h_only=False,
error_tol=1,
interactive_plotting=False,
show_mesh=False,
show_graph=True):
mesh = Mesh()
mesh.create([
[0, 0],
[1, 0],
[1, 1],
[0, 1],
], [
[2, 3, 0, 1, 0],
], [
[0, 1, 1],
[1, 2, 1],
[2, 3, 1],
[3, 0, 1],
], [])
mesh.refine_all_elements()
shapeset = H1Shapeset()
pss = PrecalcShapeset(shapeset)
space = H1Space(mesh, shapeset)
set_bc(space)
space.set_uniform_order(1)
wf = WeakForm(1)
set_forms(wf)
sln = Solution()
rsln = Solution()
solver = DummySolver()
selector = H1ProjBasedSelector(CandList.HP_ANISO, 1.0, -1, shapeset)
view = ScalarView("Solution")
iter = 0
graph = []
while 1:
space.assign_dofs()
sys = LinSystem(wf, solver)
sys.set_spaces(space)
sys.set_pss(pss)
sys.assemble()
sys.solve_system(sln)
dofs = sys.get_matrix().shape[0]
if interactive_plotting:
view.show(sln,
lib=lib,
notebook=True,
filename="a%02d.png" % iter)
rsys = RefSystem(sys)
rsys.assemble()
rsys.solve_system(rsln)
hp = H1Adapt([space])
hp.set_solutions([sln], [rsln])
err_est = hp.calc_error() * 100
err_est = hp.calc_error(sln, rsln) * 100
print "iter=%02d, err_est=%5.2f%%, DOFS=%d" % (iter, err_est, dofs)
graph.append([dofs, err_est])
if err_est < error_tol:
break
hp.adapt(selector, threshold, strategy)
iter += 1
if not interactive_plotting:
view.show(sln, lib=lib, notebook=True)
if show_mesh:
mview = MeshView("Mesh")
mview.show(mesh, lib="mpl", notebook=True, filename="b.png")
if show_graph:
from numpy import array
graph = array(graph)
import pylab
pylab.clf()
pylab.plot(graph[:, 0], graph[:, 1], "ko", label="error estimate")
pylab.plot(graph[:, 0], graph[:, 1], "k-")
pylab.title("Error Convergence for the Inner Layer Problem")
pylab.legend()
pylab.xlabel("Degrees of Freedom")
pylab.ylabel("Error [%]")
pylab.yscale("log")
pylab.grid()
pylab.savefig("graph.png")
[3, 0, 1],
], [])
# Perform initial mesh refinements
mesh.refine_all_elements()
# Create an H1 space with default shapeset
space = H1Space(mesh, P_INIT)
set_bc(space)
# Initialize the weak formulation
wf = WeakForm()
set_forms(wf)
# Initialize views
sview = ScalarView("Solution")
mview = MeshView("Mesh")
graph = []
# Initialize refinement selector
selector = H1ProjBasedSelector(CAND_LIST, CONV_EXP, H2DRS_DEFAULT_ORDER)
# Initialize the coarse mesh problem
ls = LinSystem(wf)
ls.set_spaces(space)
# Adaptivity loop
iter = 0
done = False
print "Calculating..."
sln_coarse = Solution()
ndofs += yvel.assign_dofs(ndofs)
ndofs += press.assign_dofs(ndofs)
xprev = Solution()
yprev = Solution()
xprev.set_zero(mesh)
yprev.set_zero(mesh)
# initialize the discrete problem
wf = WeakForm(3)
set_forms(wf, xprev, yprev)
# visualize the solution
vview = VectorView("velocity [m/s]", 0, 0, 1200, 350)
pview = ScalarView("pressure [Pa]", 0, 500, 1200, 350)
vview.set_min_max_range(0, 1.9)
vview.show_scale(False)
pview.show_scale(False)
pview.show_mesh(False)
solver = DummySolver()
sys = LinSystem(wf, solver)
sys.set_spaces(xvel, yvel, press)
sys.set_pss(pss)
#dp.set_external_fns(xprev, yprev)
EPS_LOW = 0.0014
for i in range(1000):
print "*** Iteration %d ***" % i
# create an H1 space
space = H1Space(mesh, shapeset)
space.set_uniform_order(5)
space.assign_dofs()
# initialize the discrete problem
wf = WeakForm(1)
set_forms(wf)
solver = DummySolver()
sys = LinSystem(wf, solver)
sys.set_spaces(space)
sys.set_pss(pss)
# assemble the stiffness matrix and solve the system
sys.assemble()
A = sys.get_matrix()
b = sys.get_rhs()
from scipy.sparse.linalg import cg
x, res = cg(A, b)
sln = Solution()
sln.set_fe_solution(space, pss, x)
view = ScalarView("Solution")
view.show(sln, lib="mayavi")
# view.wait()
mview = MeshView("Hello world!", 100, 100, 500, 500)
mview.show(mesh, lib="mpl", method="orders", notebook=False)
mview.wait()
mesh = Mesh()
mesh.load(get_12_mesh())
# Perform initial mesh refinements
mesh.refine_all_elements()
# Create an H1 space with default shapeset
space = H1Space(mesh, P_INIT)
set_bc(space)
# Initialize the weak formulation
wf = WeakForm()
set_forms(wf)
# Initialize views
sview = ScalarView("Coarse solution", 0, 0, 600, 1000)
oview = OrderView("Polynomial orders", 1220, 0, 600, 1000)
# Initialize refinement selector
selector = H1ProjBasedSelector(CAND_LIST, CONV_EXP, H2DRS_DEFAULT_ORDER)
# Initialize the linear system.
ls = LinSystem(wf)
ls.set_spaces(space)
# Adaptivity loop
it = 0
done = False
sln_coarse = Solution()
sln_fine = Solution()
def show_sol(s):
view = ScalarView("Eigenvector", 0, 0, 400, 400)
view.show(s)
# Create the x- and y- displacement space using the default H1 shapeset
xdisp = H1Space(mesh, P_INIT)
ydisp = H1Space(mesh, P_INIT)
set_bc(xdisp, ydisp)
# Initialize the weak formulation
wf = WeakForm(2)
set_forms(wf)
# Initialize the linear system.
ls = LinSystem(wf)
ls.set_spaces(xdisp, ydisp)
# Assemble and solve the matrix problem
xsln = Solution()
ysln = Solution()
ls.assemble()
ls.solve_system(xsln, ysln, lib="scipy")
# Visualize the solution
view = ScalarView("Von Mises stress [Pa]", 50, 50, 1200, 600)
E = float(200e9)
nu = 0.3
l = (E * nu) / ((1 + nu) * (1 - 2*nu))
mu = E / (2*(1 + nu))
stress = VonMisesFilter(xsln, ysln, mu, l)
view.show(stress)
# Visualize the mesh
mesh.plot(space=xdisp)
ydisp = H1Space(ymesh, shapeset)
set_bc(ydisp)
ydisp.set_uniform_order(P_INIT)
# Enumerate basis functions
ndofs = xdisp.assign_dofs()
ydisp.assign_dofs(ndofs)
# Initialize the weak formulation
wf = WeakForm(2)
set_wf_forms(wf)
# Visualization of solution and meshes
xoview = OrderView("X polynomial orders", 0, 0, 500, 500)
yoview = OrderView("Y polynomial orders", 510, 0, 500, 500)
sview = ScalarView("Von Mises stress [Pa]", 1020, 0, 500, 500)
# Matrix solver
solver = DummySolver()
# adaptivity loop
it = 1
done = False
cpu = 0.0
x_sln_coarse = Solution()
y_sln_coarse = Solution()
x_sln_fine = Solution()
y_sln_fine = Solution()
def plot(f):
s = ScalarView("")
s.show(f)
ndofs += ydisp.assign_dofs(ndofs)
# Initialize the weak formulation
wf = WeakForm(2)
set_forms(wf)
# Initialize the linear system and solver
solver = DummySolver()
sys = LinSystem(wf, solver)
sys.set_spaces(xdisp, ydisp)
sys.set_pss(pss)
# Assemble the stiffness matrix and solve the system
xsln = Solution()
ysln = Solution()
sys.assemble()
sys.solve_system(xsln, ysln, lib="scipy")
# Visualize the solution
view = ScalarView("Von Mises stress [Pa]", 50, 50, 1200, 600)
E = float(200e9)
nu = 0.3
l = (E * nu) / ((1 + nu) * (1 - 2*nu))
mu = E / (2*(1 + nu))
stress = VonMisesFilter(xsln, ysln, mu, l)
view.show(stress, lib="mayavi")
# Visualize the mesh
mview = MeshView("Hello world!", 100, 100, 500, 500)
mview.show(mesh, lib="mpl", method="orders", notebook=False)
def calc(
threshold=0.3,
strategy=0,
h_only=False,
error_tol=1,
interactive_plotting=False,
show_mesh=False,
show_graph=True,
):
mesh = Mesh()
mesh.create(
[[0, 0], [1, 0], [1, 1], [0, 1]], [[2, 3, 0, 1, 0]], [[0, 1, 1], [1, 2, 1], [2, 3, 1], [3, 0, 1]], []
)
mesh.refine_all_elements()
shapeset = H1Shapeset()
pss = PrecalcShapeset(shapeset)
space = H1Space(mesh, shapeset)
set_bc(space)
space.set_uniform_order(1)
wf = WeakForm(1)
set_forms(wf)
sln = Solution()
rsln = Solution()
solver = DummySolver()
selector = H1ProjBasedSelector(CandList.HP_ANISO, 1.0, -1, shapeset)
view = ScalarView("Solution")
iter = 0
graph = []
while 1:
space.assign_dofs()
sys = LinSystem(wf, solver)
sys.set_spaces(space)
sys.set_pss(pss)
sys.assemble()
sys.solve_system(sln)
dofs = sys.get_matrix().shape[0]
if interactive_plotting:
view.show(sln, lib=lib, notebook=True, filename="a%02d.png" % iter)
rsys = RefSystem(sys)
rsys.assemble()
rsys.solve_system(rsln)
hp = H1Adapt([space])
hp.set_solutions([sln], [rsln])
err_est = hp.calc_error() * 100
err_est = hp.calc_error(sln, rsln) * 100
print "iter=%02d, err_est=%5.2f%%, DOFS=%d" % (iter, err_est, dofs)
graph.append([dofs, err_est])
if err_est < error_tol:
break
hp.adapt(selector, threshold, strategy)
iter += 1
if not interactive_plotting:
view.show(sln, lib=lib, notebook=True)
if show_mesh:
mview = MeshView("Mesh")
mview.show(mesh, lib="mpl", notebook=True, filename="b.png")
if show_graph:
from numpy import array
graph = array(graph)
import pylab
pylab.clf()
pylab.plot(graph[:, 0], graph[:, 1], "ko", label="error estimate")
pylab.plot(graph[:, 0], graph[:, 1], "k-")
pylab.title("Error Convergence for the Inner Layer Problem")
pylab.legend()
pylab.xlabel("Degrees of Freedom")
pylab.ylabel("Error [%]")
pylab.yscale("log")
pylab.grid()
pylab.savefig("graph.png")
# Initial mesh refinements in the vmesh towards the boundary
if MULTI == True:
vmesh.refine_towards_boundary(1, INIT_REF_BDY)
# Create the x displacement space
uspace = H1Space(umesh, P_INIT_U)
vspace = H1Space(vmesh, P_INIT_V)
# Initialize the weak formulation
wf = WeakForm(2)
set_wf_forms(wf)
# Initialize views
uoview = OrderView("Coarse mesh for u", 0, 0, 360, 300)
voview = OrderView("Coarse mesh for v", 370, 0, 360, 300)
uview = ScalarView("Coarse mesh solution u", 740, 0, 400, 300)
vview = ScalarView("Coarse mesh solution v", 1150, 0, 400, 300)
# Initialize refinement selector
selector = H1ProjBasedSelector(CAND_LIST, CONV_EXP, H2DRS_DEFAULT_ORDER)
# Initialize the coarse mesh problem
ls = LinSystem(wf)
ls.set_spaces(uspace, vspace)
# adaptivity loop
it = 1
done = False
u_sln_coarse = Solution()
v_sln_coarse = Solution()
u_sln_fine = Solution()
set_bc(space)
# Set initial condition
tsln = Solution()
tsln.set_const(mesh, T_INIT)
# Initialize the weak formulation
wf = WeakForm()
set_forms(wf)
# Initialize the linear system.
ls = LinSystem(wf)
ls.set_spaces(space)
# Visualisation
sview = ScalarView("Temperature", 0, 0, 450, 600)
#title = "Time %s, exterior temperature %s" % (TIME, temp_ext(TIME))
#Tview.set_min_max_range(0,20);
#Tview.set_title(title);
#Tview.fix_scale_width(3);
# Time stepping
nsteps = int(FINAL_TIME / TAU + 0.5)
rhsonly = False
for n in range(1, nsteps + 1):
print("\n---- Time %s, time step %s, ext_temp %s ----------" %
(TIME, n, temp_ext(TIME)))
# Assemble and solve
ls.assemble()
shapeset = H1Shapeset()
pss = PrecalcShapeset(shapeset)
space = H1Space(mesh, shapeset)
set_bc(space)
space.set_uniform_order(1)
wf = WeakForm(1)
set_forms(wf)
sln = Solution()
rsln = Solution()
solver = DummySolver()
view = ScalarView("Solution")
mview = MeshView("Mesh")
graph = []
iter = 0
print "Calculating..."
while 1:
space.assign_dofs()
sys = LinSystem(wf, solver)
sys.set_spaces(space)
sys.set_pss(pss)
sys.assemble()
sys.solve_system(sln)
dofs = sys.get_matrix().shape[0]
if interactive_plotting:
xdisp.set_uniform_order(8)
ydisp.set_uniform_order(8)
set_bc(xdisp, ydisp)
ndofs = xdisp.assign_dofs(0)
ndofs += ydisp.assign_dofs(ndofs)
# initialize the discrete problem
wf = WeakForm(2)
set_forms(wf)
solver = DummySolver()
sys = LinSystem(wf, solver)
sys.set_spaces(xdisp, ydisp)
sys.set_pss(pss)
xsln = Solution()
ysln = Solution()
sys.assemble()
sys.solve_system(xsln, ysln)
view = ScalarView("Von Mises stress [Pa]", 50, 50, 1200, 600)
E = float(200e9)
nu = 0.3
stress = VonMisesFilter(xsln, ysln, E / (2*(1 + nu)),
(E * nu) / ((1 + nu) * (1 - 2*nu)))
view.show(stress)
view.wait()
tsln.set_const(mesh, T_INIT)
# Weak formulation
wf = WeakForm(1)
set_forms(wf, tsln)
# Matrix solver
solver = DummySolver()
# Linear system
ls = LinSystem(wf, solver)
ls.set_spaces(space)
ls.set_pss(pss)
# Visualisation
sview = ScalarView("Temperature", 0, 0, 450, 600)
#title = "Time %s, exterior temperature %s" % (TIME, temp_ext(TIME))
#Tview.set_min_max_range(0,20);
#Tview.set_title(title);
#Tview.fix_scale_width(3);
# Time stepping
nsteps = int(FINAL_TIME/TAU + 0.5)
rhsonly = False;
for n in range(1,nsteps+1):
print ("\n---- Time %s, time step %s, ext_temp %s ----------" % (TIME, n, temp_ext(TIME)) )
# Assemble and solve
ls.assemble()
rhsonly = True
pss = PrecalcShapeset(shapeset)
# Create finite element space
space = H1Space(mesh, shapeset)
set_bc(space)
space.set_uniform_order(P_INIT)
# Enumerate basis functions
space.assign_dofs()
# Initialize the discrete problem
wf = WeakForm(1)
set_forms(wf)
# Visualize solution, gradient, and mesh
sview = ScalarView("Coarse solution", 0, 0, 600, 1000)
gview = VectorView("Gradient", 610, 0, 600, 1000)
oview = OrderView("Polynomial orders", 1220, 0, 600, 1000)
# Matrix solver
solver = DummySolver()
# Adaptivity loop
it = 1
ndofs = 0
done = False
cpu = 0.0
sln_coarse = Solution()
sln_fine = Solution()
mesh.load(get_07_mesh())
# Perform initial mesh refinements.
for i in range(INIT_REF_NUM):
mesh.refine_all_elements()
# Create an H1 space with default shapeset
space = H1Space(mesh, P_INIT)
set_bc(space)
# Initialize the weak formulation
wf = WeakForm()
set_forms(wf)
# Initialize views
sview = ScalarView("Coarse solution", 0, 100, 798, 700)
oview = OrderView("Polynomial orders", 800, 100, 798, 700)
# Initialize the linear system.
ls = LinSystem(wf)
ls.set_spaces(space)
# Assemble and solve the matrix problem
sln = Solution()
ls.assemble()
ls.solve_system(sln)
# View the solution
sln.plot()
# View the mesh
mesh = Mesh()
mesh.load(get_12_mesh())
# Perform initial mesh refinements
mesh.refine_all_elements()
# Create an H1 space with default shapeset
space = H1Space(mesh, P_INIT)
set_bc(space)
# Initialize the weak formulation
wf = WeakForm()
set_forms(wf)
# Initialize views
sview = ScalarView("Coarse solution", 0, 0, 600, 1000)
oview = OrderView("Polynomial orders", 1220, 0, 600, 1000)
# Initialize refinement selector
selector = H1ProjBasedSelector(CAND_LIST, CONV_EXP, H2DRS_DEFAULT_ORDER)
# Initialize the linear system.
ls = LinSystem(wf)
ls.set_spaces(space)
# Adaptivity loop
it = 0
done = False
sln_coarse = Solution()
sln_fine = Solution()
set_bc(space)
# Set initial condition
tsln = Solution()
tsln.set_const(mesh, T_INIT)
# Initialize the weak formulation
wf = WeakForm()
set_forms(wf)
# Initialize the linear system.
ls = LinSystem(wf)
ls.set_spaces(space)
# Visualisation
sview = ScalarView("Temperature", 0, 0, 450, 600)
#title = "Time %s, exterior temperature %s" % (TIME, temp_ext(TIME))
#Tview.set_min_max_range(0,20);
#Tview.set_title(title);
#Tview.fix_scale_width(3);
# Time stepping
nsteps = int(FINAL_TIME/TAU + 0.5)
rhsonly = False;
for n in range(1,nsteps+1):
print ("\n---- Time %s, time step %s, ext_temp %s ----------" % (TIME, n, temp_ext(TIME)) )
# Assemble and solve
ls.assemble()
rhsonly = True