def __init__(self, outDir, genomes, primaryKeyColumn, sizes, augustusGps, annotationGp): Target.__init__(self) self.outDir = outDir self.bedDir = os.path.join(self.outDir, "bedfiles") self.bigBedDir = os.path.join(self.outDir, "bigBedfiles") self.genomes = genomes self.primaryKeyColumn = primaryKeyColumn self.augustusGps = augustusGps self.sizes = sizes self.annotationGp = annotationGp self.augustusCategories = functions_in_module(src.augustusQueries)
def __init__(self, outDir, genomes, primaryKeyColumn, sizes, gps, annotationGp): Target.__init__(self) self.outDir = outDir self.bedDir = os.path.join(self.outDir, "bedfiles") self.bigBedDir = os.path.join(self.outDir, "bigBedfiles") self.genomes = genomes self.primaryKeyColumn = primaryKeyColumn self.gps = gps self.sizes = sizes self.annotationGp = annotationGp self.categories = functions_in_module(src.queries) # bring in abstractClassifier colors self.colors = AbstractClassifier.colors