def test_works_online(self):
df, filename = nomenclature.BW_finder("adrb2_human", )
assert isinstance(df, DataFrame)
assert isinstance(filename, str)
assert "http" in filename
_np.testing.assert_array_equal(list(df.keys()), [
"protein_segment", "AAresSeq", "BW", "GPCRdb(A)",
"display_generic_number"
])
def test_works_locally(self):
df, filename = nomenclature.BW_finder(
test_filenames.GPCRmd_B2AR_nomenclature_test_xlsx,
try_web_lookup=False,
)
assert isinstance(df, DataFrame)
assert isinstance(filename, str)
_np.testing.assert_array_equal(list(df.keys()), [
"protein_segment", "AAresSeq", "BW", "GPCRdb(A)",
"display_generic_number"
])
def test_not_find_online_but_no_raise(self):
df, filename = nomenclature.BW_finder("3SNw", dont_fail=True)
assert df is None
assert isinstance(filename, str)
def test_raises_not_find_online(self):
with pytest.raises(ValueError):
nomenclature.BW_finder("B2AR", )
def test_not_find_locally_but_no_fail(self):
DF, filename = nomenclature.BW_finder("B2AR",
try_web_lookup=False,
dont_fail=True)
assert DF is None
assert isinstance(filename, str)
def test_raises_not_find_locally(self):
with pytest.raises(FileNotFoundError):
nomenclature.BW_finder("B2AR", try_web_lookup=False)