def test_island_selected(self, presenter):
presenter.model.get_island_info.return_value = \
IslandInfo(45, 67, 22, 'ATGCTA', 0.567, 0.845)
presenter._island_selected(1)
assert presenter.model.mock_calls == [call.get_island_info(1)]
assert (presenter.view.mock_calls ==
[call.highlight_global_seq(45, 67),
call.set_start('45 (zero-indexed)'),
call.set_end('67 (zero-indexed)'),
call.set_length('22 bases'),
call.set_subseq('ATGCTA'),
call.set_gc_ratio('56.7%'),
call.set_obs_exp_cpg_ratio('0.845')])
def test_island_selected(self, presenter):
presenter.model.get_island_info.return_value = \
IslandInfo(45, 67, 22, 'ATGCTA', 0.567, 0.845)
presenter._island_selected(1)
assert presenter.model.mock_calls == [call.get_island_info(1)]
assert (presenter.view.mock_calls == [
call.highlight_global_seq(45, 67),
call.set_start('45 (zero-indexed)'),
call.set_end('67 (zero-indexed)'),
call.set_length('22 bases'),
call.set_subseq('ATGCTA'),
call.set_gc_ratio('56.7%'),
call.set_obs_exp_cpg_ratio('0.845')
])
def test_get_application_group_names_auth(self, mock_requests, mock_logger):
mock_api = Mock()
mock_api.get_data.return_value = {
u'status': 200,
u'stats': {
u'foo': {
u'max': 21.597462450416614,
u'average': 21.597462450416614,
u'total': 21.597462450416614
},
u'bar': {
u'max': 1.6682055999999998,
u'average': 1.6682055999999998,
u'total': 1.6682055999999998
},
u'baz': {
u'max': 26.88331985366129,
u'average': 26.88331985366129,
u'total': 26.88331985366129
},
},
u'hours': [151],
u'start': 1430438400000,
u'time': [1430438400000],
u'data': {
u'foo': [21.597462450416614],
u'bar': [1.6682055999999998],
u'baz': [26.88331985366129],
},
u'groupBy': u'ApplicationGroup'
}
with patch('ice_pick.groups.APIRequest', spec_set=APIRequest) as mock_api_constr:
mock_api_constr.return_value = mock_api
g = Groups('http://foo.com/', dry_run=False)
g.set_http_auth(('user', 'pass'))
res = g.get_application_group_names()
self.assertEqual(mock_api_constr.mock_calls[0], call('http://foo.com/'))
self.assertEqual(mock_api.mock_calls, [
call.set_http_auth(('user', 'pass')),
call.set_aggregate('stats'),
call.set_group_by(_group_by.APPLICATION_GROUP),
call.set_end(datetime.datetime(2015, 4, 10, 5, 0)),
call.set_start(datetime.datetime(2015, 3, 13, 5, 0)),
call.get_data(),
])
self.assertEqual(sorted(res), [u'bar', u'baz', u'foo'])
self.assertEqual(mock_logger.mock_calls, [])
