def registry_runner(registry_, rtasks, output_dir):
# this will emit the PTs to an output dir
d = os.path.abspath(os.path.expanduser(output_dir))
r = registry_
log.info("Writing Pipeline Templates to ")
print "Emitting pipelines to output dir {d}".format(d=d)
write_pipeline_templates_to_avro(r.pipelines.values(), rtasks, d)
log.info("Successful wrote {n} pipelines to {d}".format(n=len(r.pipelines), d=d))
return 0
def registry_runner(registry_, rtasks, output_dir):
# this will emit the PTs to an output dir
d = os.path.abspath(os.path.expanduser(output_dir))
r = registry_
log.info("Writing Pipeline Templates to ")
print "Emitting pipelines to output dir {d}".format(d=d)
write_pipeline_templates_to_avro(r.pipelines.values(), rtasks, d)
log.info("Successful wrote {n} pipelines to {d}".format(n=len(r.pipelines),
d=d))
return 0
def run_show_templates(output_dir=None):
import pbsmrtpipe.loader as L
from pbsmrtpipe.pb_io import write_pipeline_templates_to_avro
rtasks_d, _, _, pts = L.load_all()
print pretty_registered_pipelines(pts)
if output_dir is not None:
write_pipeline_templates_to_avro(pts.values(), rtasks_d, output_dir)
return 0
def registry_runner(registry_, rtasks, output_dir):
# this will emit the PTs to an output dir
d = os.path.abspath(os.path.expanduser(output_dir))
r = registry_
log.info("Writing Pipeline Templates to {o}".format(o=output_dir))
print "Emitting pipelines to output dir {d}".format(d=d)
write_pipeline_templates_to_avro(r.pipelines.values(), rtasks, d)
for p in r.pipelines.values():
file_name = p.idx + "_pipeline.xml"
path = os.path.join(output_dir, file_name)
xml = pipeline_to_xml(p)
with open(path, 'w') as f:
f.write(str(xml))
log.info("writing pipeline {x}".format(x=path))
log.info("Successfully wrote {n} pipelines to {d}".format(n=len(r.pipelines), d=d))
return 0
def run_show_templates(avro_output_dir=None,
json_output_dir=None,
show_all=False):
import pbsmrtpipe.loader as L
from pbsmrtpipe.pb_io import (write_pipeline_templates_to_avro,
write_pipeline_templates_to_json)
rtasks_d, _, _, pts = L.load_all()
print pretty_registered_pipelines(pts, show_all=show_all)
if not show_all:
print "Run with --show-all to display (unsupported) developer/internal pipelines"
if avro_output_dir is not None:
write_pipeline_templates_to_avro(pts.values(), rtasks_d,
avro_output_dir)
if json_output_dir is not None:
write_pipeline_templates_to_json(pts.values(), rtasks_d,
json_output_dir)
return 0
