@app.route('/')
def index():
# TODO (nealsid): Query step names from database.
step_names = [
"MergeSamFiles",
"PrintReads",
"MarkDuplicates",
"SortSam",
# "wallclock",
"IndelRealigner",
"BaseRecalibrator",
"RealignerTargetCreator"
]
return render_template('main.html',
step_names_json=json.dumps(step_names),
step_names=step_names)
if __name__ == '__main__':
app.run(debug=True)
def init_db():
with app.app_context():
db = get_db()
with app.open_resource('schema.sql', mode='r') as f:
db.cursor().executescript(f.read())
db.commit()
app.logger.debug("Returning data for following steps: %s", ",".join([x[0] for x in new_data]))
return "\n".join(["\t".join([str(x) for x in row]) for row in new_data])
@app.route("/")
def index():
# TODO (nealsid): Query step names from database.
step_names = [
"MergeSamFiles",
"PrintReads",
"MarkDuplicates",
"SortSam",
# "wallclock",
"IndelRealigner",
"BaseRecalibrator",
"RealignerTargetCreator",
]
return render_template("main.html", step_names_json=json.dumps(step_names), step_names=step_names)
if __name__ == "__main__":
app.run(debug=True)
def init_db():
with app.app_context():
db = get_db()
with app.open_resource("schema.sql", mode="r") as f:
db.cursor().executescript(f.read())
db.commit()
#! /usr/bin/env python from perfdash import app app.run()
