def plot_prots(elut, pids, baseid2inds, maxcount):
import plotting as pl
for i,pid in enumerate(pids):
if pid in baseid2inds:
for rowid in baseid2inds[pid]:
row = elut.normarr[rowid]
bottom = np.log2(maxcount)*i
pl.bar(range(row.shape[1]),
np.clip(np.log2(row[0,:].T+.1),0,1000),
color=pl.COLORS[i%len(pl.COLORS)], align='center',width=1,linewidth=0,
bottom=bottom)
pl.xlim(0,row.shape[1])
pl.ylim(-.1, np.log2(maxcount)*len(pids))
def plot_big_single(arr, pids, baseid2inds, maxcount, startcol, colors=None):
import plotting as pl
colors = colors if colors is not None else pl.COLORS
for i,pid in enumerate(pids):
if pid in baseid2inds:
for rowid in baseid2inds[pid]:
row = arr[rowid]
bottom = YSCALE*i
plot_vals = np.clip(np.log2([x*100/maxcount for x in
row]),0,100)
pl.bar([x+startcol for x in range(len(row))], plot_vals,
color=colors[i%len(colors)],
#color='k',
align='center',width=1,linewidth=0, bottom=bottom,
antialiased=False)
pl.ylim(0,YSCALE*len(pids))
