def mk_bowdb_pdbs(name, pdb_files):
flags.assert_flags('frag-lib')
bowdb = ejoin(name)
cached_cmd([bowdb],
'flib', 'mk-bowdb', '--overwrite', '--cpu', str(flags.config.cpu),
bowdb, flags.config.frag_lib, *pdb_files)
def mk_bowdb(name, protein_files):
flags.assert_flags('frag-lib', 'seq-hhm-db', 'pdb-hhm-db',
'hhfrag-inc', 'hhfrag-min', 'hhfrag-max', 'blits')
bowdb = ejoin(name)
args = [
'flib',
'mk-bowdb',
'--overwrite', # let the `cached_cmd` work out the deets
'--cpu', str(flags.config.cpu),
bowdb,
flags.config.frag_lib,
]
args += protein_files
cached_cmd([bowdb], *args)
def mk_bowdb(name, protein_files):
flags.assert_flags('frag-lib', 'seq-hhm-db', 'pdb-hhm-db', 'hhfrag-inc',
'hhfrag-min', 'hhfrag-max', 'blits')
bowdb = ejoin(name)
args = [
'flib',
'mk-bowdb',
'--overwrite', # let the `cached_cmd` work out the deets
'--cpu',
str(flags.config.cpu),
bowdb,
flags.config.frag_lib,
]
args += protein_files
cached_cmd([bowdb], *args)
def mk_bowdb_pdbs(name, pdb_files):
flags.assert_flags('frag-lib')
bowdb = ejoin(name)
cached_cmd([bowdb], 'flib', 'mk-bowdb', '--overwrite', '--cpu',
str(flags.config.cpu), bowdb, flags.config.frag_lib, *pdb_files)
