def process(self, query):
if self.canned:
canned = dict(self.canned)
canned['id'] = query['id']
canned['expanded_units'] = self.expand(query['ranges'])
return canned
rcad = db.connect(config)
def translator(chain):
return db.get_translation(rcad, query['pdb'], query['model'],
chain)
translated = ranges.translate(translator, query['ranges'])
#full, summ, reqs = db.seqvar(rcad, query['pdb'], query['model'],
# translated)
full, summ, reqs = db.seqvarM3A(rcad, query['pdb'], query['model'],
translated, int(query['aid']))
return {
'id': query['id'],
'units': query['units'],
'full': full,
'summ': summ,
'reqs': reqs,
'pdb': query['pdb'],
'model': query['model'],
'ranges': query['ranges'],
'expanded_units': self.expand(query['ranges']),
'aid': query['aid'],
'descr': query['descr']
}
def process(self, query):
if self.canned:
canned = dict(self.canned)
canned['id'] = query['id']
canned['expanded_units'] = self.expand(query['ranges'])
return canned
rcad = db.connect(config)
def translator(chain):
return db.get_translation(rcad, query['pdb'], query['model'],
chain)
translated = ranges.translate(translator, query['ranges'])
#full, summ, reqs = db.seqvar(rcad, query['pdb'], query['model'],
# translated)
full, summ, reqs = db.seqvarM3A(rcad, query['pdb'], query['model'],
translated, int(query['aid']))
return {
'id': query['id'],
'units': query['units'],
'full': full,
'summ': summ,
'reqs': reqs,
'pdb': query['pdb'],
'model': query['model'],
'ranges': query['ranges'],
'expanded_units': self.expand(query['ranges']),
'aid': query['aid'],
'descr': query['descr']
}
def main(config):
connection = db.connect(config)
data = options(connection)
with open(config['options'], 'wb') as out:
json.dump(data, out)
def main(config):
connection = db.connect(config)
data = options(connection)
with open(config['options'], 'wb') as out:
json.dump(data, out)