def setGetValues(IdList, testId):
print string.ljust ("Check " + testId, rpadding),
errorFlag = False
for i in range (len(IdList)):
value = random.random()*10
rrPython.setValue (IdList[i], value)
if expectApproximately (rrPython.getValue (IdList[i]), value, 1E-6) == False:
errorFlag = True
break
print passMsg (errorFlag)
def checkIndividualEigenvalues(testId):
# Eigenvalues
print string.ljust ("Check " + testId, rpadding),
errorFlag = False
m = rrPython.getNumberOfFloatingSpecies()
try:
for i in range(0,m):
line = readLine ()
words = line.split()
eigenvalueName = words[0]
realPart = rrPython.getValue ('eigen(' + eigenvalueName + ')')
realPart = float (realPart)
if expectApproximately (realPart, float(words[1]), 1E-6) == False:
errorFlag = True
break
print passMsg (errorFlag)
except:
print 'Unexpected error in checkIndividualEigenvalues:', sys.exc_info()[0]
def checkSpeciesConcentrations(testId):
words = []
species = []
m = rrPython.getNumberOfFloatingSpecies()
for i in range(0, m):
line = readLine()
words = line.split()
words.append(rrPython.getValue(words[0]))
species.append(words)
# Steady State Concentrations
print string.ljust("Check " + testId, rpadding),
errorFlag = False
for i in range(0, m):
expectedValue = float(species[i][1])
if expectApproximately(expectedValue, species[i][2], 1E-6) == False:
errorFlag = True
break
print passMsg(errorFlag)
def checkSpeciesConcentrations(testId):
words = []
species = []
m = rrPython.getNumberOfFloatingSpecies()
for i in range (0,m):
line = readLine ()
words = line.split()
words.append (rrPython.getValue(words[0]))
species.append (words)
# Steady State Concentrations
print string.ljust ("Check " + testId, rpadding),
errorFlag = False
for i in range (0,m):
expectedValue = float (species[i][1])
if expectApproximately (expectedValue, species[i][2], 1E-6) == False:
errorFlag = True
break
print passMsg (errorFlag)
def checkFluxes(testId):
words = []
fluxes = []
# Steady State Fluxes
print string.ljust("Check " + testId, rpadding),
errorFlag = False
m = rrPython.getNumberOfFloatingSpecies()
n = rrPython.getNumberOfReactions()
for i in range(0, n):
line = readLine()
words = line.split()
words.append(rrPython.getValue(words[0]))
fluxes.append(words)
for i in range(0, n):
expectedValue = float(fluxes[i][1])
if expectApproximately(expectedValue, fluxes[i][2], 1E-6) == False:
errorFlag = True
break
print passMsg(errorFlag)
def checkFluxes(testId):
words = []
fluxes = []
# Steady State Fluxes
print string.ljust ("Check " + testId, rpadding),
errorFlag = False
m = rrPython.getNumberOfFloatingSpecies()
n = rrPython.getNumberOfReactions();
for i in range (0,n):
line = readLine ()
words = line.split()
words.append (rrPython.getValue(words[0]))
fluxes.append (words)
for i in range (0,n):
expectedValue = float (fluxes[i][1])
if expectApproximately (expectedValue, fluxes[i][2], 1E-6) == False:
errorFlag = True
break
print passMsg (errorFlag)
import rrPython
import os
import csv
os.chdir('C:\\RoadRunner\\bin')
function = 'getValue'
rrPython.loadSBMLFromFile('C:\\RoadRunner\\Models\\feedback.xml')
species = 'S1'
try:
concentration = rrPython.getValue(species)
if str(concentration) is not False:
result = 'True'
else:
result = 'False'
except:
result = 'False'
PythonTestResults = open('C:\\RoadRunner\\PythonTestResults.csv','a')
writer = csv.writer(PythonTestResults)
writevar = function + '=' + result
writer.writerow([writevar])
PythonTestResults.close()
import rrPython
import os
import csv
os.chdir('C:\\RoadRunner\\bin')
function = 'getValue'
rrPython.loadSBMLFromFile('C:\\RoadRunner\\Models\\feedback.xml')
species = 'S1'
try:
concentration = rrPython.getValue(species)
if str(concentration) is not False:
result = 'True'
else:
result = 'False'
except:
result = 'False'
PythonTestResults = open('C:\\RoadRunner\\PythonTestResults.csv', 'a')
writer = csv.writer(PythonTestResults)
writevar = function + '=' + result
writer.writerow([writevar])
PythonTestResults.close()