<body>
<p class="info">We are checking your model now...</p>
<img class="img-centre" src="http://mimoza.bordeaux.inria.fr/lib/modelmap/loader.gif" id="img" />
<div id="hidden" style="visibility:hidden;height:0px;">''')
sys.stdout.flush()
result, args = upload_file()
url = MIMOZA_UPLOAD_ERROR_URL
if OK == result:
(m_id, m_name, m_dir_id) = args
create_thanks_for_uploading_html(m_id,
m_name,
'../html',
m_dir_id,
MIMOZA_URL,
'comp.html',
groups_suffix='')
url = '%s/%s/index.html' % (MIMOZA_URL, m_dir_id)
elif ALREADY_EXISTS == result:
model_id, m_dir_id = args
url = '%s/%s/index.html' % (MIMOZA_URL, m_dir_id)
elif ALREADY_GENERALIZED == result:
(m_id, m_name, m_dir_id) = args
create_thanks_for_uploading_html(m_id, m_name, '../html', m_dir_id,
MIMOZA_URL, 'comp.html',
generate_uploaded_generalized_sbml_html)
url = '%s/%s/index.html' % (MIMOZA_URL, m_dir_id)
print('''</div>
logging.info('calling model_generalisation library')
reader = libsbml.SBMLReader()
input_document = reader.readSBML(sbml)
input_model = input_document.getModel()
m_id = input_model.getId()
sbml_directory = dirname(abspath(sbml))
groups_sbml = os.path.join(sbml_directory, '%s_with_groups.xml' % m_id)
if not os.path.exists(groups_sbml):
chebi = parse_simple(get_chebi())
gen_sbml = os.path.join(sbml_directory, '%s_generalized.xml' % m_id)
r_id2g_id, s_id2gr_id, species_id2chebi_id, ub_sps = generalize_model(
sbml, chebi, groups_sbml, gen_sbml)
create_thanks_for_uploading_html(m_id, input_model.getName(), '../html',
m_dir_id, MIMOZA_URL, 'comp.html',
generate_generalization_finished_html)
except Exception as e:
logging.info(e)
url = MIMOZA_ERROR_URL
sys.stdout.flush()
print('''</div>
</body>
<script type="text/javascript">
window.location = "%s"
</script>
</html>''' % url)
sys.stdout.flush()
<title>Checking...</title>
</head>
<body>
<p class="info">We are checking your model now...</p>
<img class="img-centre" src="http://mimoza.bordeaux.inria.fr/lib/modelmap/loader.gif" id="img" />
<div id="hidden" style="visibility:hidden;height:0px;">"""
)
sys.stdout.flush()
result, args = upload_file()
url = MIMOZA_UPLOAD_ERROR_URL
if OK == result:
(m_id, m_name, m_dir_id) = args
create_thanks_for_uploading_html(m_id, m_name, "../html", m_dir_id, MIMOZA_URL, "comp.html", groups_suffix="")
url = "%s/%s/index.html" % (MIMOZA_URL, m_dir_id)
elif ALREADY_EXISTS == result:
model_id, m_dir_id = args
url = "%s/%s/index.html" % (MIMOZA_URL, m_dir_id)
elif ALREADY_GENERALIZED == result:
(m_id, m_name, m_dir_id) = args
create_thanks_for_uploading_html(
m_id, m_name, "../html", m_dir_id, MIMOZA_URL, "comp.html", generate_uploaded_generalized_sbml_html
)
url = "%s/%s/index.html" % (MIMOZA_URL, m_dir_id)
print(
"""</div>
</body>
try:
logging.info('calling model_generalisation library')
reader = libsbml.SBMLReader()
input_document = reader.readSBML(sbml)
input_model = input_document.getModel()
m_id = input_model.getId()
sbml_directory = dirname(abspath(sbml))
groups_sbml = os.path.join(sbml_directory, '%s_with_groups.xml' % m_id)
if not os.path.exists(groups_sbml):
chebi = parse_simple(get_chebi())
gen_sbml = os.path.join(sbml_directory, '%s_generalized.xml' % m_id)
r_id2g_id, s_id2gr_id, species_id2chebi_id, ub_sps = generalize_model(sbml, chebi, groups_sbml, gen_sbml)
create_thanks_for_uploading_html(m_id, input_model.getName(), '../html', m_dir_id,
MIMOZA_URL, 'comp.html', generate_generalization_finished_html)
except Exception as e:
logging.info(e)
url = MIMOZA_ERROR_URL
sys.stdout.flush()
print('''</div>
</body>
<script type="text/javascript">
window.location = "%s"
</script>
</html>''' % url)
sys.stdout.flush()
