def test_bad_datasets(bad_cdataset, bad_ddataset):
# ensure library doesn't fail with a terrible dataset that should never
# be executed in the first place (which causes BMDS to throw NaN)
session = bmds.BMDS.latest_version(bmds.constants.CONTINUOUS, dataset=bad_cdataset)
session.add_default_models()
session.execute()
session.recommend()
assert session.recommended_model_index is None
with settings_stub(BMDS_MODEL_TIMEOUT_SECONDS=3):
# works in later versions; fix to this version
BMDSv2601 = bmds.BMDS.versions["BMDS2601"]
session = BMDSv2601(bmds.constants.DICHOTOMOUS, dataset=bad_ddataset)
session.add_default_models()
session.execute()
session.recommend()
assert session.recommended_model_index is None
# assert that the execution_halted flag is appropriately set
halted = [model.execution_halted for model in session.models]
str_halted = (
"[False, False, False, False, False, False, False, True, False, False]"
) # noqa
assert halted[7] is True and session.models[7].name == "Gamma"
assert str(halted) == str_halted
total_time = session.models[7].execution_duration
timeout = settings.BMDS_MODEL_TIMEOUT_SECONDS
assert np.isclose(total_time, timeout) or total_time > timeout
def test_stub_settings_should_raise_value_error_from_a_wrong_settings(
self, current_settings):
with pytest.raises(ValueError) as exc:
with settings_stub(WRONG_SETTING='ops'):
pass
assert 'WRONG_SETTING' in str(exc)
def test_stub_settings_should_raise_value_error_from_a_wrong_settings(
self, current_settings
):
with pytest.raises(ValueError) as exc:
with settings_stub(WRONG_SETTING='ops'):
pass
assert 'WRONG_SETTING' in str(exc)
def test_should_return_check_value_of_debug_setting(
self,
debug,
expected,
log_filter
):
with settings_stub(DEBUG=debug):
assert log_filter.filter(None) is expected
def test_stub_settings_should_setup_lazy_settings_object(self):
with patch.object(sys, 'argv',
['', '--settings=tests.samples.simple']):
with settings_stub(SIMPLE_STRING='stubed'):
assert settings.SIMPLE_STRING == 'stubed'
assert settings.SIMPLE_STRING == 'simple'
self._clean_simple_settings()
def test_stub_settings_shoud_setup_lazy_settings_object(self):
with patch.object(
sys, 'argv', ['', '--settings=tests.samples.simple']
):
with settings_stub(SIMPLE_STRING='stubed'):
assert settings.SIMPLE_STRING == 'stubed'
assert settings.SIMPLE_STRING == 'simple'
self._clean_simple_settings()
def test_should_configure_if_simple_settings_is_installed():
POOL_OF_RAMOS = {
'backend_a': ['path.to.backend'],
'backend_b': ['path.to.backend'],
}
assert get_installed_pools() != POOL_OF_RAMOS
with settings_stub(POOL_OF_RAMOS=POOL_OF_RAMOS):
assert get_installed_pools() == POOL_OF_RAMOS
def test_stub_settings_with_context_manager(self, current_settings):
with settings_stub(SIMPLE_STRING='stubed'):
assert current_settings.SIMPLE_STRING == 'stubed'
assert current_settings.SIMPLE_STRING == 'simple'
def test_timeout():
# confirm that timeout setting works as expected; slow dataset provided
# by CEBS team on 2017-11-12. Only slow in BMDS version 2.6; fixed in 2.7.
dataset = bmds.ContinuousIndividualDataset(
doses=[
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0.000316,
0.000316,
0.000316,
0.000316,
0.001,
0.001,
0.001,
0.001,
0.00316,
0.00316,
0.00316,
0.00316,
0.01,
0.01,
0.01,
0.01,
0.0316,
0.0316,
0.0316,
0.0316,
0.1,
0.1,
0.1,
0.1,
0.316,
0.316,
0.316,
0.316,
1,
1,
1,
1,
3.16,
3.16,
3.16,
3.16,
10,
10,
10,
10,
],
responses=[
2289000,
2047000,
2108000,
2148000,
2325000,
2014000,
2173000,
2261000,
2024000,
2272000,
1742000,
1970000,
1850000,
1030000,
2074000,
2159000,
2348000,
2270000,
2238000,
2082000,
1894000,
1829000,
2181000,
2044000,
2438000,
2264000,
2303000,
2316000,
2061000,
2165000,
2310000,
2294000,
2550000,
2076000,
2284000,
2249000,
2308000,
2096000,
2347000,
2340000,
2170000,
1916000,
2858000,
2448000,
2648000,
2226000,
1164000,
1283000,
1278000,
1577000,
40305,
36227,
27300,
21531,
],
)
with settings_stub(BMDS_MODEL_TIMEOUT_SECONDS=3):
model = models.Hill_217(dataset)
model.execute()
assert model.has_successfully_executed is False
with settings_stub(BMDS_MODEL_TIMEOUT_SECONDS=10):
model = models.Hill_217(dataset)
model.execute()
assert model.has_successfully_executed is True
from simple_settings import settings
from simple_settings.utils import settings_stub
# Stub examples
with settings_stub(SOME_SETTING='foo'):
assert settings.SOME_SETTING == 'foo'
assert settings.SOME_SETTING == 'bar'
@settings_stub(SOME_SETTING='foo')
def get_some_setting():
return settings.SOME_SETTING
assert get_some_setting() == 'foo'
assert settings.SOME_SETTING == 'bar'
# -*- coding: utf-8 -*-
from simple_settings import settings
from simple_settings.utils import settings_stub
# Stub examples
with settings_stub(SOME_SETTING='foo'):
assert settings.SOME_SETTING == 'foo'
assert settings.SOME_SETTING == 'bar'
@settings_stub(SOME_SETTING='foo')
def get_some_setting():
return settings.SOME_SETTING
assert get_some_setting() == 'foo'
assert settings.SOME_SETTING == 'bar'
def settings_with_applications(token):
applications_settings = {'test': token}
with settings_stub(
AUTH_APPLICATIONS=applications_settings) as mocked_settings:
yield mocked_settings
def test_stub_settings_with_context_manager(self, current_settings):
with settings_stub(SIMPLE_STRING='stubed'):
assert current_settings.SIMPLE_STRING == 'stubed'
assert current_settings.SIMPLE_STRING == 'simple'
def test_settings():
assert settings.BMDS_MODEL_TIMEOUT_SECONDS == 30
with settings_stub(BMDS_MODEL_TIMEOUT_SECONDS=1):
assert settings.BMDS_MODEL_TIMEOUT_SECONDS == 1