def restart(context, max_gaussian, restart, email, case, extras, disable,
start_from, config_path):
"""Restart MIP with modifications to the config file."""
if not case and not config_path:
log.error("you must provide either case of config path")
context.abort()
if case:
most_recent = api.case(case).first()
config_path = most_recent.config_path
if max_gaussian:
new_values = restart_api.update_maxgaussian(config_path)
else:
extras = dict(extras)
new_values = restart_api.update_config(config_path,
start_step=start_from,
disable_branches=disable,
**extras)
log.info("update config: {}".format(config_path))
restart_api.write_config(config_path, new_values)
if restart:
email = email or environ_email() or new_values.get('email')
kwargs = dict(executable=context.obj['mip_exe'], email=email)
process = start_mip(config=config_path, **kwargs)
process.wait()
if process.returncode != 0:
log.error("error starting analysis, check the output")
context.abort()
if case:
new_entry = build_pending(most_recent.case_id,
most_recent.root_dir)
commit_analysis(context.obj['manager'], new_entry)
def commit_analysis(manager, new_entry, email=None):
"""Store new analysis in the database."""
# look up previous runs for the same case
old_runs = api.case(case_id=new_entry.case_id)
latest_run = old_runs.first()
if latest_run is None or not same_entry(latest_run, new_entry):
if new_entry.status == 'completed':
# set failed runs to not be visible in dashboard
for old_run in old_runs:
old_runs.is_visible = False
manager.commit()
# save the new entry to the database
if latest_run and latest_run.status in ('running', 'pending'):
# replace old temporary entries
log.debug("deleting existing entry: %s", new_entry.case_id)
latest_run.delete()
manager.commit()
if email:
new_entry.user = api.user(email)
manager.add_commit(new_entry)
log.info("added new entry: {entry.case_id} - {entry.status}"
.format(entry=new_entry))
