def addtriples(graph, subject, ieuris, iod, de, ds):
def gettagvalue(tag, vr):
return getsinglevalue(ds, tag, vr)
predicate = uritools.urifromtag(de.tag, gettagvalue=gettagvalue)
currentsubject = subject
if long(de.tag) in datadict:
tagvm = datadict[long(de.tag)][1]
else:
tagvm = '1'
# try to determine IE and change currentsubject accordingly
ie = None
if iod and de.tag in iesbyattribute:
if iod in iesbyattribute[de.tag]:
matches = iesbyattribute[de.tag][iod]
else: # attribute is not used in this IOD, see if IE is unique anyway
matches = iesbyattribute[de.tag][None]
if len(matches) == 1:
ie = matches[0]
if ie not in ieuris:
print >> sys.stderr, "IE", ie, "not in IOD for", iod
ieuris[ie] = None
currentsubject = ieuris[ie]
if currentsubject is None:
currentsubject = getieuri(graph, subject, ds, ie)
ieuris[ie] = currentsubject
if type(de.value) == dicom.sequence.Sequence:
colist, dummy = generateuri()
lastitem = None
for de1 in de:
listitem, dummy = generateuri()
if lastitem:
graph.add((lastitem, CO.nextItem, listitem))
else:
graph.add((colist, CO.firstItem, listitem))
lastitem = listitem
object, ieuris1, iod1 = datasetcontext(graph, de1)
graph.add((colist, CO.item, listitem))
graph.add((listitem, CO.itemContent, object))
graph.add((listitem, RDF.type, CO.ListItem))
graph.add((listitem, RDFS.label, rdflib.Literal('List item')))
cl = uritools.urifromtag(de.tag,
isclass=True,
gettagvalue=gettagvalue)
graph.add((object, RDF.type, cl))
for de2 in de1:
addtriples(graph, object, ieuris1, iod1, de2, de1)
if lastitem:
graph.add((currentsubject, predicate, colist))
graph.add((colist, RDF.type, CO.List))
graph.add((colist, RDFS.label, rdflib.Literal('List')))
graph.add((colist, CO.lastItem, listitem))
elif type(de.value) in (dicom.multival.MultiValue, list) or tagvm != '1':
vr = de.VR
if type(de.value) not in (dicom.multival.MultiValue, list):
de = [de.value]
colist, dummy = generateuri()
lastitem = None
for de1 in de:
object = tripleobject(vr, de1)
if object is None:
continue
listitem, dummy = generateuri()
if lastitem:
graph.add((lastitem, CO.nextItem, listitem))
else:
graph.add((colist, CO.firstItem, listitem))
lastitem = listitem
graph.add((colist, CO.item, listitem))
graph.add((listitem, CO.itemContent, object))
graph.add((listitem, RDF.type, CO.ListItem))
graph.add((listitem, RDFS.label, rdflib.Literal('List item')))
if lastitem:
graph.add((currentsubject, predicate, colist))
graph.add((colist, RDF.type, CO.List))
graph.add((colist, RDFS.label, rdflib.Literal('List')))
graph.add((colist, CO.lastItem, listitem))
else:
assert de.VM == 1, describedataelement(de)
object = tripleobject(de.VR, de.value)
if object is not None:
extratriples(graph, currentsubject, de, ie)
graph.add((currentsubject, predicate, object))
def addtriples(graph,subject,ieuris,iod,de,ds):
def gettagvalue(tag,vr):
return getsinglevalue(ds,tag,vr)
predicate=uritools.urifromtag(de.tag,gettagvalue=gettagvalue)
currentsubject=subject
if long(de.tag) in datadict:
tagvm=datadict[long(de.tag)][1]
else:
tagvm='1'
# try to determine IE and change currentsubject accordingly
ie=None
if iod and de.tag in iesbyattribute:
if iod in iesbyattribute[de.tag]:
matches=iesbyattribute[de.tag][iod]
else: # attribute is not used in this IOD, see if IE is unique anyway
matches=iesbyattribute[de.tag][None]
if len(matches)==1:
ie=matches[0]
if ie not in ieuris:
print >> sys.stderr,"IE",ie,"not in IOD for",iod
ieuris[ie]=None
currentsubject=ieuris[ie]
if currentsubject is None:
currentsubject=getieuri(graph,subject,ds,ie)
ieuris[ie]=currentsubject
if type(de.value)==dicom.sequence.Sequence:
colist,dummy=generateuri()
lastitem=None
for de1 in de:
listitem,dummy=generateuri()
if lastitem:
graph.add((lastitem,CO.nextItem,listitem))
else:
graph.add((colist,CO.firstItem,listitem))
lastitem=listitem
object,ieuris1,iod1=datasetcontext(graph,de1)
graph.add((colist,CO.item,listitem))
graph.add((listitem,CO.itemContent,object))
graph.add((listitem,RDF.type,CO.ListItem))
graph.add((listitem,RDFS.label,rdflib.Literal('List item')))
cl=uritools.urifromtag(de.tag,isclass=True,gettagvalue=gettagvalue)
graph.add((object,RDF.type,cl))
for de2 in de1:
addtriples(graph,object,ieuris1,iod1,de2,de1)
if lastitem:
graph.add((currentsubject,predicate,colist))
graph.add((colist,RDF.type,CO.List))
graph.add((colist,RDFS.label,rdflib.Literal('List')))
graph.add((colist,CO.lastItem,listitem))
elif type(de.value) in (dicom.multival.MultiValue,list) or tagvm!='1':
vr=de.VR
if type(de.value) not in (dicom.multival.MultiValue,list):
de=[de.value]
colist,dummy=generateuri()
lastitem=None
for de1 in de:
object=tripleobject(vr,de1)
if object is None:
continue
listitem,dummy=generateuri()
if lastitem:
graph.add((lastitem,CO.nextItem,listitem))
else:
graph.add((colist,CO.firstItem,listitem))
lastitem=listitem
graph.add((colist,CO.item,listitem))
graph.add((listitem,CO.itemContent,object))
graph.add((listitem,RDF.type,CO.ListItem))
graph.add((listitem,RDFS.label,rdflib.Literal('List item')))
if lastitem:
graph.add((currentsubject,predicate,colist))
graph.add((colist,RDF.type,CO.List))
graph.add((colist,RDFS.label,rdflib.Literal('List')))
graph.add((colist,CO.lastItem,listitem))
else:
assert de.VM==1,describedataelement(de)
object=tripleobject(de.VR,de.value)
if object is not None:
extratriples(graph,currentsubject,de,ie)
graph.add((currentsubject,predicate,object))
s1=s.replace(' rdf:nodeID="'+nodeid+'"','',1)
if nodeid not in s1:
s=s1
pos-=13
pos=s.find(' rdf:nodeID="',pos)
return s
graph=uritools.newgraph()
for tag,(vr,vm,label,restricted,name) in datadict.items():
if not name:
continue
if vr=='NONE':
continue
assert label
s1=uritools.urifromtag(tag)
s2=uritools.urifromtag(tag,numeric=True)
for subject,subject1 in [(s1,s2),(s2,s1)]:
graph.add((subject,OWL.equivalentProperty,subject1))
graph.add((subject,RDFS.isDefinedBy,settings.ontodoc))
graph.add((subject,RDFS.label,rdflib.Literal(label)))
range=None
if vr=='SQ' or vm!='1':
cl=OWL.ObjectProperty
range=CO.List
elif vr in ('UI','OB','OW','OB or OW','OW or OB'):
cl=OWL.ObjectProperty
