def testSetDataModelInput(self): """ """ edPluginBest = self.createPlugin() xsPluginItemGood01 = self.getPluginConfiguration(os.path.join(self.strDataPath, "XSConfiguration.xml")) edPluginBest.setConfiguration(xsPluginItemGood01) edPluginBest.setScriptExecutable("cat") edPluginBest.configure() from XSDataBestv10 import XSDataBestInput xsDataBestInput = XSDataBestInput() from XSDataCommon import XSDataAbsorbedDoseRate from XSDataCommon import XSDataFloat from XSDataCommon import XSDataString from XSDataCommon import XSDataTime from XSDataCommon import XSDataFile from XSDataCommon import XSDataSpeed from XSDataCommon import XSDataString from XSDataCommon import XSDataAngle xsDataBestInput.setCrystalAbsorbedDoseRate(XSDataAbsorbedDoseRate(0.22e06)) xsDataBestInput.setCrystalShape(XSDataFloat(1)) xsDataBestInput.setCrystalSusceptibility(XSDataFloat(1.5)) xsDataBestInput.setDetectorType(XSDataString("q210-2x")) xsDataBestInput.setBeamExposureTime(XSDataTime(1)) xsDataBestInput.setBeamMaxExposureTime(XSDataTime(10000)) xsDataBestInput.setBeamMinExposureTime(XSDataTime(0.1)) xsDataBestInput.setGoniostatMinRotationWidth(XSDataAngle(0.1)) xsDataBestInput.setGoniostatMaxRotationSpeed(XSDataSpeed(10)) xsDataBestInput.setAimedResolution(XSDataFloat(2)) xsDataBestInput.setAimedRedundancy(XSDataFloat(6.5)) xsDataBestInput.setAimedCompleteness(XSDataFloat(0.9)) xsDataBestInput.setAimedIOverSigma(XSDataFloat(3)) xsDataBestInput.setComplexity(XSDataString("min")) fileDirectory = edPluginBest.getWorkingDirectory() bestFileContentDat = EDUtilsFile.readFile(os.path.join(self.strDataPath, "bestfile.dat")) xsDataBestInput.setBestFileContentDat(XSDataString(bestFileContentDat)) bestFileContentPar = EDUtilsFile.readFile(os.path.join(self.strDataPath, "bestfile.par")) xsDataBestInput.setBestFileContentPar(XSDataString(bestFileContentPar)) bestFileContentHKL = EDUtilsFile.readFile(os.path.join(self.strDataPath, "bestfile1.hkl")) listBestFileContentHKL = [] listBestFileContentHKL.append(XSDataString(bestFileContentHKL)) xsDataBestInput.setBestFileContentHKL(listBestFileContentHKL) xsDataBestInput.outputFile(self.strObtainedInputFile) strExpectedInput = self.readAndParseFile(self.strReferenceInputFile) strObtainedInput = self.readAndParseFile(self.strObtainedInputFile) xsDataInputExpected = XSDataBestInput.parseString(strExpectedInput) xsDataInputObtained = XSDataBestInput.parseString(strObtainedInput) EDAssert.equal(xsDataInputExpected.marshal(), xsDataInputObtained.marshal()) self.cleanUp(edPluginBest)
def getXSDataBestInput(self, _xsDataBeam, _xsDataSample, _xsDataDetector, _xsDataGoniostat, _xsDataDiffractionPlan, _oedStrBestFileContentDat, _oedStrBestFileContentPar, _oedListBestFileContentHKL): xsDataBestInput = XSDataBestInput() # Sample xdDataAbsorbedDose = None xsDataSusceptibility = None # Could be None if sample has not been set # It could be not None in case Raddose has calculated an absorbed dose with default sample values if(_xsDataSample is not None): xdDataAbsorbedDose = _xsDataSample.getAbsorbedDoseRate() xsDataSusceptibility = _xsDataSample.getSusceptibility() # Could be None if Raddose failed to calculate the absorbed dose if(xdDataAbsorbedDose is not None): xsDataBestInput.setCrystalAbsorbedDoseRate(_xsDataSample.getAbsorbedDoseRate()) xsDataBestInput.setCrystalSusceptibility(xsDataSusceptibility) # crystalShape # Default value is 1 (We assume that Xtal is smaller than beam) xsDataFloatCrystalShape = _xsDataSample.getShape() if(xsDataFloatCrystalShape is None): xsDataBestInput.setCrystalShape(XSDataFloat(1)) else: xsDataBestInput.setCrystalShape(xsDataFloatCrystalShape) # Detector xsDataBestInput.setDetectorType(_xsDataDetector.getType()) # Beam xsDataBestInput.setBeamExposureTime(_xsDataBeam.getExposureTime()) xsDataBestInput.setBeamMinExposureTime(_xsDataBeam.getMinExposureTimePerImage()) # Goniostat xsDataBestInput.setGoniostatMaxRotationSpeed(_xsDataGoniostat.getMaxOscillationSpeed()) xsDataBestInput.setGoniostatMinRotationWidth(_xsDataGoniostat.getMinOscillationWidth()) # Diffraction plan xsDataBestInput.setAimedResolution(_xsDataDiffractionPlan.getAimedResolution()) xsDataBestInput.setAimedRedundancy(_xsDataDiffractionPlan.getAimedMultiplicity()) xsDataBestInput.setAimedCompleteness(_xsDataDiffractionPlan.getAimedCompleteness()) xsDataBestInput.setAimedIOverSigma(_xsDataDiffractionPlan.getAimedIOverSigmaAtHighestResolution()) xsDataBestInput.setBeamMaxExposureTime(_xsDataDiffractionPlan.getMaxExposureTimePerDataCollection()) xsDataBestInput.setComplexity(_xsDataDiffractionPlan.getComplexity()) # Best Files xsDataBestInput.setBestFileContentDat(_oedStrBestFileContentDat) xsDataBestInput.setBestFileContentPar(_oedStrBestFileContentPar) xsDataBestInput.setBestFileContentHKL(_oedListBestFileContentHKL) return xsDataBestInput
def testSetDataModelInput(self): """ """ edPluginBest = self.createPlugin() xsPluginItemGood01 = self.getPluginConfiguration( os.path.join(self.strDataPath, "XSConfiguration.xml")) edPluginBest.setConfiguration(xsPluginItemGood01) edPluginBest.setScriptExecutable("cat") edPluginBest.configure() from XSDataBestv10 import XSDataBestInput xsDataBestInput = XSDataBestInput() from XSDataCommon import XSDataAbsorbedDoseRate from XSDataCommon import XSDataFloat from XSDataCommon import XSDataString from XSDataCommon import XSDataTime from XSDataCommon import XSDataFile from XSDataCommon import XSDataSpeed from XSDataCommon import XSDataString from XSDataCommon import XSDataAngle xsDataBestInput.setCrystalAbsorbedDoseRate( XSDataAbsorbedDoseRate(0.22E+06)) xsDataBestInput.setCrystalShape(XSDataFloat(1)) xsDataBestInput.setCrystalSusceptibility(XSDataFloat(1.5)) xsDataBestInput.setDetectorType(XSDataString("q210-2x")) xsDataBestInput.setBeamExposureTime(XSDataTime(1)) xsDataBestInput.setBeamMaxExposureTime(XSDataTime(10000)) xsDataBestInput.setBeamMinExposureTime(XSDataTime(0.1)) xsDataBestInput.setGoniostatMinRotationWidth(XSDataAngle(0.1)) xsDataBestInput.setGoniostatMaxRotationSpeed(XSDataSpeed(10)) xsDataBestInput.setAimedResolution(XSDataFloat(2)) xsDataBestInput.setAimedRedundancy(XSDataFloat(6.5)) xsDataBestInput.setAimedCompleteness(XSDataFloat(0.9)) xsDataBestInput.setAimedIOverSigma(XSDataFloat(3)) xsDataBestInput.setComplexity(XSDataString("min")) fileDirectory = edPluginBest.getWorkingDirectory() bestFileContentDat = EDUtilsFile.readFile( os.path.join(self.strDataPath, "bestfile.dat")) xsDataBestInput.setBestFileContentDat(XSDataString(bestFileContentDat)) bestFileContentPar = EDUtilsFile.readFile( os.path.join(self.strDataPath, "bestfile.par")) xsDataBestInput.setBestFileContentPar(XSDataString(bestFileContentPar)) bestFileContentHKL = EDUtilsFile.readFile( os.path.join(self.strDataPath, "bestfile1.hkl")) listBestFileContentHKL = [] listBestFileContentHKL.append(XSDataString(bestFileContentHKL)) xsDataBestInput.setBestFileContentHKL(listBestFileContentHKL) xsDataBestInput.outputFile(self.strObtainedInputFile) strExpectedInput = self.readAndParseFile(self.strReferenceInputFile) strObtainedInput = self.readAndParseFile(self.strObtainedInputFile) xsDataInputExpected = XSDataBestInput.parseString(strExpectedInput) xsDataInputObtained = XSDataBestInput.parseString(strObtainedInput) EDAssert.equal(xsDataInputExpected.marshal(), xsDataInputObtained.marshal()) self.cleanUp(edPluginBest)