def __init__(self, parent=None): self.moduleName = 'Workflow' self._layouts = [] self.maximumNumberOfInput = 3 self._CurrentViewID = 1 self._CurrentViewNodes = {} for i in range(1, self.maximumNumberOfInput + 1): subDictionnary = { 'Background': '', 'Foreground': '', 'Label': '', } self._CurrentViewNodes['Input%i' % i] = subDictionnary if not parent: self.parent = slicer.qMRMLWidget() self.parent.setLayout(qt.QVBoxLayout()) self.parent.setMRMLScene(slicer.mrmlScene) else: self.parent = parent self.layout = self.parent.layout() if not parent: self.setup() self.parent.show() self._setupLayouts()
def setupEditorWidget(self): editorWidgetParent = slicer.qMRMLWidget() editorWidgetParent.setLayout(qt.QVBoxLayout()) editorWidgetParent.setMRMLScene(slicer.mrmlScene) self.editorWidget = EditorWidget(parent=editorWidgetParent) self.editorWidget.setup() self.segmentationGroupBoxLayout.addWidget(self.editorWidget.parent)
def __init__(self, parent = None): if not parent: self.parent = slicer.qMRMLWidget() self.parent.setLayout(qt.QVBoxLayout()) self.parent.setMRMLScene(slicer.mrmlScene) else: self.parent = parent self.layout = self.parent.layout() if not parent: self.setup() self.parent.show() jsonFiles = glob(SimpleFilters.JSON_DIR+"*.json") jsonFiles.sort(cmp=lambda x,y: cmp(os.path.basename(x), os.path.basename(y))) self.jsonFilters = [] for fname in jsonFiles: try: fp = file(fname, "r") j = json.load(fp,object_pairs_hook=OrderedDict) if j["name"] in dir(sitk): self.jsonFilters.append(j) else: import sys sys.stderr.write("Unknown SimpleITK class \"{0}\".\n".format(j["name"])) except Exception as e: import sys sys.stderr.write("Error while reading \"{0}\". Exception: {1}\n".format(fname, e)) self.filterParameters = None self.logic = None
def __init__(self, parent = None): if not parent: self.parent = slicer.qMRMLWidget() self.parent.setLayout(qt.QVBoxLayout()) self.parent.setMRMLScene(slicer.mrmlScene) else: self.parent = parent self.layout = self.parent.layout() if not parent: self.setup() self.parent.show() self.fileDialog = None # Initialize Data Nodes List self.inputDataNodes = [] # use OrderedDict for class-specific dictionary of function calls # map feature class to list of features self.featureClassKeys = collections.OrderedDict() self.featureClassKeys["Node Information"] = ["Node"] self.featureClassKeys["First-Order Statistics"] = ["Voxel Count", "Gray Levels", "Energy", "Entropy" , "Minimum Intensity", "Maximum Intensity", "Mean Intensity", "Median Intensity", "Range", "Mean Deviation", "Root Mean Square", "Standard Deviation", "Skewness", "Kurtosis", "Variance", "Uniformity"] self.featureClassKeys["Morphology and Shape"] = ["Volume mm^3", "Volume cc", "Surface Area mm^2", "Surface:Volume Ratio", "Compactness 1", "Compactness 2", "Maximum 3D Diameter", "Spherical Disproportion", "Sphericity"] self.featureClassKeys["Texture: GLCM"] = ["Autocorrelation", "Cluster Prominence", "Cluster Shade", "Cluster Tendency", "Contrast", "Correlation", "Difference Entropy", "Dissimilarity", "Energy (GLCM)", "Entropy(GLCM)", "Homogeneity 1", "Homogeneity 2", "IMC1", "IDMN", "IDN", "Inverse Variance", "Maximum Probability", "Sum Average", "Sum Entropy", "Sum Variance", "Variance (GLCM)"] #IMC2 missing self.featureClassKeys["Texture: GLRL"] = ["SRE", "LRE", "GLN", "RLN", "RP", "LGLRE", "HGLRE", "SRLGLE", "SRHGLE", "LRLGLE", "LRHGLE"] self.featureClassKeys["Geometrical Measures"] = ["Extruded Surface Area", "Extruded Volume", "Extruded Surface:Volume Ratio"] self.featureClassKeys["Renyi Dimensions"] = ["Box-Counting Dimension", "Information Dimension", "Correlation Dimension"] # used to map feature class to a list of auto-generated feature checkbox widgets self.featureWidgets = collections.OrderedDict() for key in self.featureClassKeys.keys(): self.featureWidgets[key] = list()
def __init__(self, parent = None): if not parent: self.parent = slicer.qMRMLWidget() self.parent.setLayout(qt.QVBoxLayout()) self.parent.setMRMLScene(slicer.mrmlScene) else: self.parent = parent self.layout = self.parent.layout() if not parent: self.setup() self.parent.show() pathToJSON = os.path.dirname(os.path.realpath(__file__)) + '/Resources/json/' # need to hit reload to get correct file print("pathToJSON: ",pathToJSON) print(__file__) jsonFiles = glob(pathToJSON+"*.json") self.jsonFilters = [] for fname in jsonFiles: try: fp = file(fname, "r") j = json.load(fp,object_pairs_hook=OrderedDict) self.jsonFilters.append(j) except: print "Error while reading $1", fname self.filterParameters = None
def __init__(self, parent=None): if not parent: self.parent = slicer.qMRMLWidget() self.parent.setLayout(qt.QVBoxLayout()) self.parent.setMRMLScene(slicer.mrmlScene) else: self.parent = parent self.layout = self.parent.layout() # this flag is 1 if there is an update in progress self.__updating = 1 # the pointer to the logic self.__logic = None if not parent: self.setup() self.__inputVolumeNodeSelector.setMRMLScene(slicer.mrmlScene) self.__seedFiducialsNodeSelector.setMRMLScene(slicer.mrmlScene) self.__vesselnessVolumeNodeSelector.setMRMLScene(slicer.mrmlScene) self.__outputVolumeNodeSelector.setMRMLScene(slicer.mrmlScene) self.__outputModelNodeSelector.setMRMLScene(slicer.mrmlScene) self.__stopperFiducialsNodeSelector.setMRMLScene(slicer.mrmlScene) # after setup, be ready for events self.__updating = 0 self.parent.show() # register default slots self.parent.connect('mrmlSceneChanged(vtkMRMLScene*)', self.onMRMLSceneChanged)
def __init__(self, parent = None, rootDir = None, MODULE = None): """ Init function. @param parent: The parent qt.QWidget of the settings file. @type parent: qt.QWidget @param rootDir: The root directory where to store the settings file. @type rootDir: str @param MODULE: The XNAT Slicer module. @type MODULE: XNATSlicerWidget """ if not parent: self.parent = slicer.qMRMLWidget() else: self.parent = parent self.Events = MokaUtils.Events(self.EVENT_TYPES) self.MODULE = MODULE self.filepath = os.path.join(rootDir, self.FILE_PREFIX + self.FILE_SUFFIX) #-------------------- # OS specific database settings #-------------------- self.dbFormat = qt.QSettings.IniFormat self.__resetDatabase() self.defaultHosts = {'Central': 'https://central.xnat.org', 'CNDA': 'https://cnda.wustl.edu'} self.setup() self.currErrorMessage = "" slicer.app.processEvents()
def __init__(self, parent=None, embedded=False, suppliedEffects=[], showVolumesFrame=True): self.observerTags = [] # set attributes from ctor parameters self.embedded = embedded self.suppliedEffects = suppliedEffects self.showVolumesFrame = showVolumesFrame # TODO: figure out why module/class hierarchy is different # between developer builds ans packages try: # for developer build... self.editUtil = EditorLib.EditUtil.EditUtil() except AttributeError: # for release package... self.editUtil = EditorLib.EditUtil() #->> check to make sure it works with a supplied parent if not parent: self.parent = slicer.qMRMLWidget() self.parent.setLayout(qt.QVBoxLayout()) self.parent.setMRMLScene(slicer.mrmlScene) self.layout = self.parent.layout() self.setup() self.parent.show() else: self.parent = parent self.layout = parent.layout() #self.setup() if self.embedded: self.setup()
def __init__(self, parent = None): self.moduleName = 'Workflow' self._layouts = [] self.maximumNumberOfInput = 3 self._CurrentViewID = 1 self._CurrentViewNodes = {} for i in range(1, self.maximumNumberOfInput + 1): subDictionnary = { 'Background' : '', 'Foreground' : '', 'Label' : '', } self._CurrentViewNodes['Input%i' %i] = subDictionnary if not parent: self.parent = slicer.qMRMLWidget() self.parent.setLayout(qt.QVBoxLayout()) self.parent.setMRMLScene(slicer.mrmlScene) else: self.parent = parent self.layout = self.parent.layout() if not parent: self.setup() self.parent.show() self._setupLayouts()
def __init__(self, parent=None, test=False): logFile = os.path.join(os.environ['TMPDIR'], "DerivedImageQAWidget" + '.log') logging.basicConfig(filename=logFile, level=logging.DEBUG, format='%(module)s.%(funcName)s - %(levelname)s: %(message)s') self.logging = logging.getLogger(__name__) self.images = ('t2_average', 't1_average') # T1 is second so that reviewers see it as background for regions self.regions = ('labels_tissue', 'caudate_left', 'caudate_right', 'accumben_left', 'accumben_right', 'putamen_left', 'putamen_right', 'globus_left', 'globus_right', 'thalamus_left', 'thalamus_right', 'hippocampus_left', 'hippocampus_right') self.currentSession = None self.imageQAWidget = None self.navigationWidget = None self.followUpDialog = None self.notes = None # Handle the UI display with/without Slicer if parent is None and not test: self.parent = slicer.qMRMLWidget() self.parent.setLayout(qt.QVBoxLayout()) self.parent.setMRMLScene(slicer.mrmlScene) self.layout = self.parent.layout() self.logic = DerivedImageQALogic(self) self.setup() self.parent.show() elif not test: self.parent = parent self.layout = self.parent.layout() self.logic = DerivedImageQALogic(self, test=test) elif test: self.logic = DerivedImageQALogic(self, test=test)
def __init__(self, parent=None): VTKObservationMixin.__init__(self) self.editUtil = EditUtil() # Kept for backward compatibility # mrml volume node instances self.master = None self.masterWhenMergeWasSet = None # Editor color LUT self.colorNodeID = None # string self.createMergeOptions = "" self.mergeVolumePostfix = "-label" # slicer helper class self.volumesLogic = slicer.modules.volumes.logic() # widgets that are dynamically created on demand # pseudo signals # - python callable that gets True or False self.selectCommand = None if not parent: self.parent = slicer.qMRMLWidget() self.parent.setLayout(qt.QVBoxLayout()) self.parent.setMRMLScene(slicer.mrmlScene) self.create() self.parent.show() else: self.parent = parent self.create()
def createUserInterface(self): """ This step is mostly empty. A volume rendering threshold is added to be useful. """ self.__layout = self.__parent.createUserInterface() self.__threshRange = slicer.qMRMLRangeWidget() self.__threshRange.decimals = 0 self.__threshRange.singleStep = 1 self.__threshRange.connect('valuesChanged(double,double)', self.onThresholdChanged) qt.QTimer.singleShot(0, self.killButton) ThreshGroupBox = qt.QGroupBox() ThreshGroupBox.setTitle('3D Visualization Intensity Threshold') ThreshGroupBoxLayout = qt.QFormLayout(ThreshGroupBox) ThreshGroupBoxLayout.addRow(self.__threshRange) self.__layout.addRow(ThreshGroupBox) editorWidgetParent = slicer.qMRMLWidget() editorWidgetParent.setLayout(qt.QVBoxLayout()) editorWidgetParent.setMRMLScene(slicer.mrmlScene) self.__editorWidget = EditorWidget(parent=editorWidgetParent) self.__editorWidget.setup() self.__layout.addRow(editorWidgetParent) self.hideUnwantedEditorUIElements() RestartGroupBox = qt.QGroupBox() RestartGroupBox.setTitle('Restart') RestartGroupBoxLayout = qt.QFormLayout(RestartGroupBox) self.__RestartButton = qt.QPushButton('Return to Step 1') RestartGroupBoxLayout.addRow(self.__RestartButton) self.__RemoveCroppedSubtractionMap = qt.QCheckBox() self.__RemoveCroppedSubtractionMap.checked = True self.__RemoveCroppedSubtractionMap.setToolTip( "Delete the cropped version of your subtaction map.") RestartGroupBoxLayout.addRow("Delete cropped subtraction map: ", self.__RemoveCroppedSubtractionMap) self.__RemoveFullSubtracitonMap = qt.QCheckBox() self.__RemoveFullSubtracitonMap.checked = True self.__RemoveFullSubtracitonMap.setToolTip( "Delete the full version of your subtaction map.") RestartGroupBoxLayout.addRow("Delete full subtraction map: ", self.__RemoveFullSubtracitonMap) self.__RemoveROI = qt.QCheckBox() self.__RemoveROI.checked = False self.__RemoveROI.setToolTip( "Delete the ROI resulting from your subtaction map.") RestartGroupBoxLayout.addRow("Delete ROI: ", self.__RemoveROI) # self.__RestartButton.setEnabled(0) self.__RestartButton.connect('clicked()', self.Restart) self.__RestartActivated = True self.__layout.addRow(RestartGroupBox)
def __init__(self, parent=None): self.testingServer = None self.dicomBrowser = None # options for browser self.browserPersistent = False # TODO: are these wrapped so we can avoid magic numbers? self.dicomModelUIDRole = 32 self.dicomModelTypeRole = self.dicomModelUIDRole + 1 self.dicomModelTypes = ('Root', 'Patient', 'Study', 'Series', 'Image') # state management for compressing events # - each time an update is requested, start the singleShot timer # - if the update is requested before the timeout, the call to timer.start() resets it # - the actual update only happens when the the full time elapses since the last request self.updateRecentActivityTimer = qt.QTimer() self.updateRecentActivityTimer.singleShot = True self.updateRecentActivityTimer.interval = 500 self.updateRecentActivityTimer.connect('timeout()', self.onUpateRecentActivityRequestTimeout) if not parent: self.parent = slicer.qMRMLWidget() self.parent.setLayout(qt.QVBoxLayout()) self.parent.setMRMLScene(slicer.mrmlScene) self.layout = self.parent.layout() self.setup() self.parent.show() else: self.parent = parent self.layout = parent.layout() globals()['d'] = self
def __init__(self, parent=None): if not parent: self.parent = slicer.qMRMLWidget() self.parent.setLayout(qt.QVBoxLayout()) else: self.parent = parent self.layout = self.parent.layout() # this flag is 1 if there is an update in progress self.__updating = 1 self.__mvNode = None self.extractFrame = False # chart view node self.__cvn = None # data node #slicer.mrmlScene.AddNode(slicer.vtkMRMLDoubleArrayNode()) # chart node self.__cn = slicer.vtkMRMLChartNode() self.__cn.SetScene(slicer.mrmlScene) slicer.mrmlScene.AddNode(self.__cn) # image play setup self.timer = qt.QTimer() self.timer.setInterval(50) self.timer.connect('timeout()', self.goToNext)
def __init__(self, parent=None, showVolumesFrame=True): self.observerTags = [] self.shortcuts = [] self.toolsBox = None # set attributes from ctor parameters self.showVolumesFrame = showVolumesFrame # TODO: figure out why module/class hierarchy is different # between developer builds ans packages try: # for developer build... self.editUtil = EditorLib.EditUtil.EditUtil() except AttributeError: # for release package... self.editUtil = EditorLib.EditUtil() if not parent: self.parent = slicer.qMRMLWidget() self.parent.setLayout(qt.QVBoxLayout()) self.parent.setMRMLScene(slicer.mrmlScene) self.layout = self.parent.layout() self.setup() self.parent.show() else: self.parent = parent self.layout = parent.layout()
def __init__( self, parent=None ): if not parent: self.parent = slicer.qMRMLWidget() self.parent.setLayout( qt.QVBoxLayout() ) else: self.parent = parent self.layout = self.parent.layout() # this flag is 1 if there is an update in progress self.__updating = 1 self.__mvNode = None self.extractFrame = False # chart view node self.__cvn = None # data node #slicer.mrmlScene.AddNode(slicer.vtkMRMLDoubleArrayNode()) # chart node self.__cn = slicer.vtkMRMLChartNode() self.__cn.SetScene(slicer.mrmlScene) slicer.mrmlScene.AddNode(self.__cn) # image play setup self.timer = qt.QTimer() self.timer.setInterval(50) self.timer.connect('timeout()', self.goToNext)
def __init__(self, parent=None): if not parent: self.parent = slicer.qMRMLWidget() self.parent.setLayout(qt.QVBoxLayout()) self.parent.setMRMLScene(slicer.mrmlScene) else: self.parent = parent self.layout = self.parent.layout() # this flag is 1 if there is an update in progress self.__updating = 1 # the pointer to the logic and the mrmlManager self.__mrmlManager = None self.__logic = None if not parent: self.setup() # after setup, be ready for events self.__updating = 0 self.parent.show() if slicer.mrmlScene.GetTagByClassName( "vtkMRMLScriptedModuleNode") != 'ScriptedModule': slicer.mrmlScene.RegisterNodeClass(vtkMRMLScriptedModuleNode())
def __init__(self, parent=None): self.testingServer = None # state management for compressing events # - each time an update is requested, start the singleShot timer # - if the update is requested before the timeout, the call to timer.start() resets it # - the actual update only happens when the the full time elapses since the last request self.updateRecentActivityTimer = qt.QTimer() self.updateRecentActivityTimer.singleShot = True self.updateRecentActivityTimer.interval = 500 self.updateRecentActivityTimer.connect( 'timeout()', self.onUpateRecentActivityRequestTimeout) if not parent: self.parent = slicer.qMRMLWidget() self.parent.setLayout(qt.QVBoxLayout()) self.parent.setMRMLScene(slicer.mrmlScene) self.layout = self.parent.layout() self.setup() self.parent.show() else: self.parent = parent self.layout = parent.layout() globals()['d'] = self
def __init__(self, parent=None): self.testingServer = None # let the popup window manage data loading self.useDetailsPopup = True # hide the search box self.hideSearch = True # options for browser self.browserPersistent = False # TODO: are these wrapped so we can avoid magic numbers? self.dicomModelUIDRole = 32 self.dicomModelTypeRole = self.dicomModelUIDRole + 1 self.dicomModelTypes = ('Root', 'Patient', 'Study', 'Series', 'Image') if not parent: self.parent = slicer.qMRMLWidget() self.parent.setLayout(qt.QVBoxLayout()) self.parent.setMRMLScene(slicer.mrmlScene) self.layout = self.parent.layout() self.setup() self.parent.show() else: self.parent = parent self.layout = parent.layout() globals()['d'] = self
def __init__(self, parent=None): self.testingServer = None self.dicomApp = None # hide the search box self.hideSearch = True # options for browser self.browserPersistent = False # TODO: are these wrapped so we can avoid magic numbers? self.dicomModelUIDRole = 32 self.dicomModelTypeRole = self.dicomModelUIDRole + 1 self.dicomModelTypes = ('Root', 'Patient', 'Study', 'Series', 'Image') # state management for compressing events self.resumeModelRequested = False self.updateRecentActivityRequested = False if not parent: self.parent = slicer.qMRMLWidget() self.parent.setLayout(qt.QVBoxLayout()) self.parent.setMRMLScene(slicer.mrmlScene) self.layout = self.parent.layout() self.setup() self.parent.show() else: self.parent = parent self.layout = parent.layout() globals()['d'] = self
def __init__(self, parent=None, configFile=None): self.util = QAUtil() if configFile is None: configFile = os.path.join(os.path.dirname(slicer.modules.qualityassurance.path), "qualityassurance.cfg.EXAMPLE") else: print "This is the config file:", configFile self.util.CONFIG_FILE = configFile self.logger = self.util.getLogger() for name in self.util.findModules(): print name exec "self.{module} = QAModule(self.logger, '{module}')".format(module=name) in globals(), locals() if parent is None: self.logger.debug("Parent is None") self.parent = slicer.qMRMLWidget() self.parent.setLayout(qt.QVBoxLayout()) self.parent.setMRMLScene(slicer.mrmlScene) self.layout = self.parent.layout() self.setup() # self.createModuleButtons(self.parent) self.parent.show() else: self.logger.debug("Parent is: %s" % type(parent)) self.parent = parent self.layout = self.parent.layout()
def __init__(self, parent=None): if not parent: self.parent = slicer.qMRMLWidget() self.parent.setLayout(qt.QVBoxLayout()) self.parent.setMRMLScene(slicer.mrmlScene) else: self.parent = parent self.layout = self.parent.layout() # this flag is 1 if there is an update in progress self.__updating = 1 # the pointer to the logic self.__logic = None if not parent: self.setup() self.__inputVolumeNodeSelector.setMRMLScene(slicer.mrmlScene) self.__seedFiducialsNodeSelector.setMRMLScene(slicer.mrmlScene) self.__outputVolumeNodeSelector.setMRMLScene(slicer.mrmlScene) self.__previewVolumeNodeSelector.setMRMLScene(slicer.mrmlScene) # after setup, be ready for events self.__updating = 0 self.parent.show() # register default slots self.parent.connect("mrmlSceneChanged(vtkMRMLScene*)", self.onMRMLSceneChanged)
def __init__(self, parent=None, parameterNode=None, parameter=None, colorNode=None, selectCommand=None): self.colorNode = colorNode self.parameterNode = parameterNode self.parameter = parameter self.selectCommand = selectCommand self.recents = [] self.label = None if not parent: self.parent = slicer.qMRMLWidget() self.parent.setObjectName('EditMRMLWidget') self.parent.setLayout(qt.QVBoxLayout()) self.parent.setMRMLScene(slicer.mrmlScene) self.create() p = qt.QCursor().pos() self.parent.setGeometry(p.x(), p.y(), 300, 700) self.parent.show() self.parent.raise_() else: self.parent = parent self.create()
def __init__(self, parent = None): #def __init__(self, parent): #ScriptedLoadableModuleWidget.setup(self) self.tnode = None self.strHostname = None self.times0 = 0 self.chooseCell = False self.connectTag = False self.registTag = False self.receiveCurrentNode = None if not parent: self.parent = slicer.qMRMLWidget() self.parent.setLayout(qt.QVBoxLayout()) self.parent.setMRMLScene(slicer.mrmlScene) else: self.parent = parent self.layout = self.parent.layout() if not parent: self.setup() self.parent.show() self.logic = SmartTemplateLogic(None) self.generateTag = False
def __init__(self, parent=None): if not parent: self.parent = slicer.qMRMLWidget() self.parent.setLayout(qt.QVBoxLayout()) self.parent.setMRMLScene(slicer.mrmlScene) else: self.parent = parent self.layout = self.parent.layout() self.transformNode = None self.transformNodeObserverTag = None self.transformObserverTag = None self.transform = None self.acquireButtonFlag = False self.collectSignal = False self.pointerPosition = np.zeros(3) self.pointsCounts = 0 self.recordedpoint = np.zeros(3) self.statusTimer = qt.QTimer() self.statusTimer.setInterval(100) self.statusTimer.connect('timeout()', self.changeTrackerStatus) if not parent: self.setup() self.parent.show()
def __init__(self, parent = None): if not parent: self.parent = slicer.qMRMLWidget() self.parent.setLayout(qt.QVBoxLayout()) self.parent.setMRMLScene(slicer.mrmlScene) else: self.parent = parent self.layout = self.parent.layout() if not parent: self.setup() self.markersFiducialsNodeSelector.setMRMLScene(slicer.mrmlScene) self.targetFiducialNodeSelector.setMRMLScene(slicer.mrmlScene) self.entryFiducialNodeSelector.setMRMLScene(slicer.mrmlScene) self.parent.show()
def __init__(self, parent=None): self.testingServer = None self.dicomBrowser = None # options for browser self.browserPersistent = False # TODO: are these wrapped so we can avoid magic numbers? self.dicomModelUIDRole = 32 self.dicomModelTypeRole = self.dicomModelUIDRole + 1 self.dicomModelTypes = ('Root', 'Patient', 'Study', 'Series', 'Image') # state management for compressing events # - each time an update is requested, start the singleShot timer # - if the update is requested before the timeout, the call to timer.start() resets it # - the actual update only happens when the the full time elapses since the last request self.updateRecentActivityTimer = qt.QTimer() self.updateRecentActivityTimer.singleShot = True self.updateRecentActivityTimer.interval = 500 self.updateRecentActivityTimer.connect( 'timeout()', self.onUpateRecentActivityRequestTimeout) if not parent: self.parent = slicer.qMRMLWidget() self.parent.setLayout(qt.QVBoxLayout()) self.parent.setMRMLScene(slicer.mrmlScene) self.layout = self.parent.layout() self.setup() self.parent.show() else: self.parent = parent self.layout = parent.layout() globals()['d'] = self
def __init__( self, parent=None ): if not parent: self.parent = slicer.qMRMLWidget() self.parent.setLayout( qt.QVBoxLayout() ) self.parent.setMRMLScene( slicer.mrmlScene ) else: self.parent = parent self.layout = self.parent.layout() # this flag is 1 if there is an update in progress self.__updating = 1 # the pointer to the logic and the mrmlManager self.__mrmlManager = None self.__logic = None if not parent: self.setup() # after setup, be ready for events self.__updating = 0 self.parent.show() if slicer.mrmlScene.GetTagByClassName( "vtkMRMLScriptedModuleNode" ) != 'ScriptedModule': slicer.mrmlScene.RegisterNodeClass(vtkMRMLScriptedModuleNode())
def __init__(self, parent=None): if not parent: self.parent = slicer.qMRMLWidget() self.parent.setLayout(qt.QVBoxLayout()) self.parent.setMRMLScene(slicer.mrmlScene) else: self.parent = parent self.layout = self.parent.layout() if not parent: self.setup() self.parent.show() # Module Variables self.timer = qt.QTimer() self.timer.setInterval(20) self.timer.connect('timeout()', self.doSomething) self.fiducialMatrixStatus = False self.outsideSign = 0 self.needleInsertionStarted = False self.dataBufferIsEmpty = True self.trajectoryRawData = [ 0, 0, 0] self.minimumDistanceBetweenSeperatePoints = 2 #self.n = 48 #self.p = numpy.zeros((self.n,3)) # 10 mm offset for template widt self.templateWidth = -10
def __init__(self, parent=None, rootDir=None, MODULE=None): """ Init function. @param parent: The parent qt.QWidget of the settings file. @type parent: qt.QWidget @param rootDir: The root directory where to store the settings file. @type rootDir: str @param MODULE: The XNAT Slicer module. @type MODULE: XNATSlicerWidget """ if not parent: self.parent = slicer.qMRMLWidget() else: self.parent = parent self.Events = MokaUtils.Events(self.EVENT_TYPES) self.MODULE = MODULE self.filepath = os.path.join(rootDir, self.FILE_PREFIX + self.FILE_SUFFIX) #-------------------- # OS specific database settings #-------------------- self.dbFormat = qt.QSettings.IniFormat self.__resetDatabase() self.defaultHosts = { 'Central': 'https://central.xnat.org', 'CNDA': 'https://cnda.wustl.edu' } self.setup() self.currErrorMessage = "" slicer.app.processEvents()
def __init__(self, parent = None): if not parent: self.parent = slicer.qMRMLWidget() self.parent.setLayout(qt.QVBoxLayout()) self.parent.setMRMLScene(slicer.mrmlScene) else: self.parent = parent self.layout = self.parent.layout() if not parent: self.setup() self.parent.show() self.logic = ViewpointLogic() self.sliderTranslationDefaultMm = 0 self.sliderTranslationMinMm = -200 self.sliderTranslationMaxMm = 200 self.sliderViewAngleDefaultDeg = 30 self.cameraViewAngleMinDeg = 5.0 # maximum magnification self.cameraViewAngleMaxDeg = 150.0 # minimum magnification self.sliderParallelScaleDefaultDeg = 1 self.cameraParallelScaleMinDeg = 0.001 # maximum magnification self.cameraParallelScaleMaxDeg = 1000.0 # minimum magnification self.sliderSingleStepValue = 1 self.sliderPageStepValue = 10 self.enableViewpointButtonState = 0 self.enableViewpointButtonTextState0 = "Enable Viewpoint Mode" self.enableViewpointButtonTextState1 = "Disable Viewpoint Mode"
def __init__(self, parent=None): if not parent: self.parent = slicer.qMRMLWidget() self.parent.setLayout(qt.QVBoxLayout()) self.parent.setMRMLScene(slicer.mrmlScene) else: self.parent = parent self.logic = VolumeMaskerLogic()
def __init__(self, parent=None): if not parent: self.parent = slicer.qMRMLWidget() self.parent.setLayout(qt.QVBoxLayout()) else: self.parent = parent self.layout = self.parent.layout() if not parent: self.setup() self.parent.show() self.inputsFilled = False
def __init__(self, parent = None): if not parent: self.parent = slicer.qMRMLWidget() self.parent.setLayout(qt.QVBoxLayout()) self.parent.setMRMLScene(slicer.mrmlScene) else: self.parent = parent self.layout = self.parent.layout() if not parent: self.setup() self.parent.show()
def __init__(self, parent=None): if not parent: self.parent = slicer.qMRMLWidget() self.parent.setLayout(qt.QVBoxLayout()) self.parent.setMRMLScene(slicer.mrmlScene) else: self.parent = parent self.layout = self.parent.layout() if not parent: self.setup() self.parent.show()
def __init__(self, parent = None): self.developerMode = False # change this to true to get reload and test if not parent: self.parent = slicer.qMRMLWidget() self.parent.setLayout(qt.QVBoxLayout()) self.parent.setMRMLScene(slicer.mrmlScene) else: self.parent = parent self.layout = self.parent.layout() if not parent: self.setup() self.parent.show()
def __init__(self, parent=None, rootDir=None, browser = None): if not parent: self.parent = slicer.qMRMLWidget() else: self.parent = parent self.browser = browser self.filepath = os.path.join(rootDir, 'XNATSettings.ini') self.database = qt.QSettings(self.filepath, qt.QSettings.IniFormat) self.defaultHosts = {'Central': 'https://central.xnat.org', 'CNDA': 'https://cnda.wustl.edu'} self.setup() self.currErrorMessage = ""
def __init__(self, parent = None): """Widget constructor (existing module)""" if not parent: self.parent = slicer.qMRMLWidget() self.parent.setLayout(qt.QVBoxLayout()) self.parent.setMRMLScene(slicer.mrmlScene) else: self.parent = parent self.layout = self.parent.layout() if not parent: self.setup() self.parent.show()
def __init__(self, parent=None): """Widget constructor (existing module)""" if not parent: self.parent = slicer.qMRMLWidget() self.parent.setLayout(qt.QVBoxLayout()) self.parent.setMRMLScene(slicer.mrmlScene) else: self.parent = parent self.layout = self.parent.layout() if not parent: self.setup() self.parent.show()
def __init__(self, parent=None): """ It seems to be that Slicer creates an instance of this class with a qMRMLWidget parent. If for some reason it doesn't, this __init__ will. """ if not parent: self.parent = slicer.qMRMLWidget() self.parent.setLayout(qt.QVBoxLayout()) self.parent.setMRMLScene(slicer.mrmlScene) else: self.parent = parent self.layout = self.parent.layout()
def __init__(self, parent=None): if not parent: self.parent = slicer.qMRMLWidget() self.parent.setLayout(qt.QVBoxLayout()) self.parent.setMRMLScene(slicer.mrmlScene) else: self.parent = parent # self.parent = slicer.modules.cropvolume.widgetRepresentation() self.layout = self.parent.layout() if not parent: self.setup() self.parent.show()
def __init__(self, parent = None): self.moduleName = 'Workflow' self._ViewNodeIDs = { 'Active' : None, 'Secondary' : None, 'Label' : None} if not parent: self.parent = slicer.qMRMLWidget() self.parent.setLayout(qt.QVBoxLayout()) self.parent.setMRMLScene(slicer.mrmlScene) else: self.parent = parent self.layout = self.parent.layout() if not parent: self.setup() self.parent.show()
def __init__(self, parent = None): if not parent: self.parent = slicer.qMRMLWidget() self.parent.setLayout(qt.QVBoxLayout()) self.parent.setMRMLScene(slicer.mrmlScene) else: self.parent = parent self.layout = self.parent.layout() if not parent: self.setup() self.parent.show() self.logic = InBoreWorkspaceCheckerLogic() self.tag = 0
def __init__(self, moduleName, parentWidget=None): """Widget constructor (existing module)""" # EventsTrigger.__init__(self) if not parentWidget: self.parent = slicer.qMRMLWidget() self.parent.setLayout(qt.QVBoxLayout()) self.parent.setMRMLScene(slicer.mrmlScene) else: self.parent = parentWidget self.__moduleName__ = moduleName self.layout = self.parent.layout() self.logic = PreProcessingLogic(moduleName)
def __init__(self, parent=None): if not parent: self.parent = slicer.qMRMLWidget() self.parent.setLayout(qt.QVBoxLayout()) self.parent.setMRMLScene(slicer.mrmlScene) else: self.parent = parent self.layout = self.parent.layout() self.lastCommandId = 0 self.timeoutCounter = 0 if not parent: self.setup() self.parent.show()
def __init__( self, parent=None ): """ It seems to be that Slicer creates an instance of this class with a qMRMLWidget parent. My understanding of parenthood when it comes to modules is currently limited -- I'll update this when I know more. """ if not parent: self.parent = slicer.qMRMLWidget() self.parent.setLayout( qt.QVBoxLayout() ) self.parent.setMRMLScene( slicer.mrmlScene ) else: self.parent = parent self.layout = self.parent.layout()
def __init__( self, parent=None ): """ It seems to be that Slicer creates an instance of this class with a qMRMLWidget parent. If for some reason it doesn't, this __init__ will. """ if not parent: self.parent = slicer.qMRMLWidget() self.parent.setLayout( qt.QVBoxLayout() ) self.parent.setMRMLScene( slicer.mrmlScene ) else: self.parent = parent self.layout = self.parent.layout()
def __init__(self, parent=None): if not parent: self.parent = slicer.qMRMLWidget() self.parent.setLayout( qt.QVBoxLayout()) # dispone los elementos de manera vertical self.parent.setMRMLScene( slicer.mrmlScene) # Asocia la escena mrml al widget else: self.parent = parent self.layout = self.parent.layout() if not parent: self.setup() self.parent.show()
def __init__( self, parent=None ): if not parent: self.parent = slicer.qMRMLWidget() self.parent.setLayout( qt.QVBoxLayout() ) self.parent.setMRMLScene( slicer.mrmlScene ) else: self.parent = parent self.logic = WebGLExportLogic() self.__httpd = None self.__port = 3456 self.__p = None if not parent: self.setup() self.parent.show()
def __init__(self, parent = None): if not parent: self.parent = slicer.qMRMLWidget() self.parent.setLayout(qt.QVBoxLayout()) self.parent.setMRMLScene(slicer.mrmlScene) else: self.parent = parent self.layout = self.parent.layout() if not parent: self.setup() self.parent.show() self.moduleName = 'SlicerTestRecentFilesTests' self.tester = SlicerTestRecentFilesTestsTest()
def __init__(self, parent=None): self.observerTags = [] self.logic = SampleDataLogic(self.logMessage) if not parent: self.parent = slicer.qMRMLWidget() self.parent.setLayout(qt.QVBoxLayout()) self.parent.setMRMLScene(slicer.mrmlScene) self.layout = self.parent.layout() self.setup() self.parent.show() else: self.parent = parent self.layout = parent.layout()
def __init__(self, parent=None): if not parent: self.parent = slicer.qMRMLWidget() self.parent.setLayout(qt.QVBoxLayout()) self.parent.setMRMLScene(slicer.mrmlScene) else: self.parent = parent self.distanceTable = list() self.outputNode = None if not parent: self.setup() self.vtkSelector.setMRMLScene(slicer.mrmlScene) self.outputSelector.setMRMLScene(slicer.mrmlScene) self.parent.show()