def save_single_phasePlot(
fp,
fn,
filename,
label="",
title="Diagram of states",
legendOn=True,
xLim=1,
yLim=1,
fontSize=10,
saveFormat='png'):
"""
Plot a single sequence on the Pappu-Das phase plot (diagram of states).
INPUT:
--------------------------------------------------------------------------------
fp | Fraction of positive residues
fn | Fraction of negative residues
filename | Path/name of file to save plot (.png is appended)
label | On-plot label of sequence (DEFAULT = no label)
title | Plot title (DEFAULT = "Diagram of states")
legendOn | Include the phase diagram region legend (DEFAULT = True)
xLim | Set upper limit for the x axis (DEFAULT = 1)
yLim | Set upper limit for the x axis (DEFAULT = 1)
fontSize | Set font size for the point labels (DEFAULT = 10)
saveFormat | Defines the file formal to save plots as. This parameter
is passed to matplotlibs savefig command which supports
the following filetypes: emf, eps, pdf, png, ps, raw,
rgba, svg, svgz. (DEFAULT = png)
OUTPUT:
--------------------------------------------------------------------------------
Nothing but a plot should be generated on screen
"""
plotting.save_single_phasePlot(
fp,
fn,
filename,
label,
title,
legendOn,
xLim,
yLim,
fontSize,
saveFormat)
def save_single_phasePlot(
fp,
fn,
filename,
label="",
title="Diagram of states",
legendOn=True,
xLim=1,
yLim=1,
fontSize=10):
"""
Plot a single sequence on the Pappu-Das phase plot (diagram of states).
INPUT:
--------------------------------------------------------------------------------
fp | Fraction of positive residues
fn | Fraction of negative residues
filename | Path/name of file to save plot (.png is appended)
label | On-plot label of sequence (DEFAULT = no label)
title | Plot title (DEFAULT = "Diagram of states")
legendOn | Include the phase diagram region legend (DEFAULT = True)
xLim | Set upper limit for the x axis (DEFAULT = 1)
yLim | Set upper limit for the x axis (DEFAULT = 1)
fontSize | Set font size for the point labels (DEFAULT = 10)
OUTPUT:
--------------------------------------------------------------------------------
Nothing but a plot should be generated on screen
"""
plotting.save_single_phasePlot(
fp,
fn,
filename,
label,
title,
legendOn,
xLim,
yLim,
fontSize)
def save_phaseDiagramPlot(
self,
filename,
label="",
title="Diagram of states",
legendOn=True,
xLim=1,
yLim=1,
fontSize=10):
"""
Generates the Pappu-Das phase diagram (diagram of states), places
this sequence on that plot, and saves it at the <filename> location
INPUT:
--------------------------------------------------------------------------------
filename | Writeable filename
label | A label for the point on the phase diagram
title | Plot title (DEFAULT = 'Diagram of states')
legendOn | Boolean for if the figure legend should be displayed or not
xLim | Max value for the x axis (fract. positive charge) (DEFAULT = 1)
yLim | Max value for the y axis (fract. negative charge) (DEFAULT = 1)
fontSize | Size of font for label (DEFAULT = 10)
OUTPUT:
--------------------------------------------------------------------------------
Nothing, but creates a .png file at the filename location
"""
plotting.save_single_phasePlot(
self.get_fraction_positive(),
self.get_fraction_negative(),
filename,
label,
title,
legendOn,
xLim,
yLim,
fontSize)
def save_single_phasePlot(fp,
fn,
filename,
label="",
title="Diagram of states",
legendOn=True,
xLim=1,
yLim=1,
fontSize=10,
saveFormat='png'):
"""
Plot a single sequence on the Pappu-Das phase plot (diagram of states).
INPUT:
--------------------------------------------------------------------------------
fp | Fraction of positive residues
fn | Fraction of negative residues
filename | Path/name of file to save plot (.png is appended)
label | On-plot label of sequence (DEFAULT = no label)
title | Plot title (DEFAULT = "Diagram of states")
legendOn | Include the phase diagram region legend (DEFAULT = True)
xLim | Set upper limit for the x axis (DEFAULT = 1)
yLim | Set upper limit for the x axis (DEFAULT = 1)
fontSize | Set font size for the point labels (DEFAULT = 10)
saveFormat | Defines the file formal to save plots as. This parameter
is passed to matplotlibs savefig command which supports
the following filetypes: emf, eps, pdf, png, ps, raw,
rgba, svg, svgz. (DEFAULT = png)
OUTPUT:
--------------------------------------------------------------------------------
Nothing but a plot should be generated on screen
"""
plotting.save_single_phasePlot(fp, fn, filename, label, title, legendOn,
xLim, yLim, fontSize, saveFormat)
