示例#1
0
def main(**kwargs):

    write_version_py(VERSION, ISRELEASED, 'mdentropy/version.py')

    setup(name=NAME,
          version=VERSION,
          platforms=(
              "Windows",
              "Linux",
              "Mac OS-X",
              "Unix",
          ),
          classifiers=(
              'Intended Audience :: Science/Research',
              'License :: OSI Approved :: MIT License',
              'Programming Language :: Python',
              'Programming Language :: Python :: 3',
              'Programming Language :: Python :: 3.4',
              'Programming Language :: Python :: 3.5',
              'Operating System :: Unix',
              'Operating System :: MacOS',
              'Operating System :: Microsoft :: Windows',
              'Topic :: Information Analysis',
          ),
          keywords="molecular dynamics entropy analysis",
          author="Carlos Xavier Hernández",
          author_email="*****@*****.**",
          url='https://github.com/msmbuilder/%s' % NAME,
          download_url='https://github.com/msmbuilder/%s/tarball/master' %
          NAME,
          license='MIT',
          packages=find_packages(),
          include_package_data=True,
          package_data={
              '': ['README.md', 'requirements.txt'],
          },
          zip_safe=False,
          entry_points={
              'console_scripts': [
                  'mdent = mdentropy.cli.main:main',
              ],
          },
          **kwargs)
示例#2
0
def main(**kwargs):

    write_version_py(VERSION, ISRELEASED, 'msmexplorer/version.py')

    setup(name=NAME,
          version=VERSION,
          description=('Visualizations for statistical models'
                       'of biomolecular dynamics.'),
          platforms=(
              "Windows",
              "Linux",
              "Mac OS-X",
              "Unix",
          ),
          classifiers=(
              'Intended Audience :: Science/Research',
              'License :: OSI Approved :: MIT License',
              'Programming Language :: Python',
              'Programming Language :: Python :: 3',
              'Programming Language :: Python :: 3.4',
              'Programming Language :: Python :: 3.5',
              'Operating System :: Unix',
              'Operating System :: MacOS',
              'Operating System :: Microsoft :: Windows',
              'Topic :: Scientific/Engineering',
          ),
          keywords=('visualizations', 'biomolecular', 'simulations',
                    'markov state models'),
          author="Carlos Xavier Hernández",
          author_email="*****@*****.**",
          url='https://github.com/cxhernandez/%s' % NAME,
          download_url='https://github.com/cxhernandez/%s/tarball/master' %
          NAME,
          license='LGPLv2+',
          packages=find_packages(),
          include_package_data=True,
          package_data={
              NAME: ['README.md', 'requirements.txt'],
          },
          zip_safe=False,
          ext_modules=extensions,
          cmdclass={'build_ext': build_ext},
          **kwargs)
示例#3
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def main(**kwargs):

    write_version_py(VERSION, ISRELEASED, 'mdentropy/version.py')

    setup(
        name=NAME,
        version=VERSION,
        platforms=("Windows", "Linux", "Mac OS-X", "Unix",),
        classifiers=(
            'Intended Audience :: Science/Research',
            'License :: OSI Approved :: MIT License',
            'Programming Language :: Python',
            'Programming Language :: Python :: 3',
            'Programming Language :: Python :: 3.4',
            'Programming Language :: Python :: 3.5',
            'Operating System :: Unix',
            'Operating System :: MacOS',
            'Operating System :: Microsoft :: Windows',
            'Topic :: Information Analysis',
        ),
        keywords="molecular dynamics entropy analysis",
        author="Carlos Xavier Hernández",
        author_email="*****@*****.**",
        url='https://github.com/msmbuilder/%s' % NAME,
        download_url='https://github.com/msmbuilder/%s/tarball/master' % NAME,
        license='MIT',
        packages=find_packages(),
        include_package_data=True,
        package_data={
            '': ['README.md',
                 'requirements.txt'],
        },
        zip_safe=False,
        entry_points={
            'console_scripts': [
                'mdent = mdentropy.cli.main:main',
            ],
        },
        **kwargs
    )
示例#4
0
def main(**kwargs):

    write_version_py(VERSION, ISRELEASED, 'msmexplorer/version.py')

    setup(
        name=NAME,
        version=VERSION,
        description=('Visualizations for statistical models'
                     'of biomolecular dynamics.'),
        platforms=("Windows", "Linux", "Mac OS-X", "Unix",),
        classifiers=(
            'Intended Audience :: Science/Research',
            'License :: OSI Approved :: MIT License',
            'Programming Language :: Python',
            'Programming Language :: Python :: 3',
            'Programming Language :: Python :: 3.4',
            'Programming Language :: Python :: 3.5',
            'Operating System :: Unix',
            'Operating System :: MacOS',
            'Operating System :: Microsoft :: Windows',
            'Topic :: Scientific/Engineering',
        ),
        keywords=('visualizations', 'biomolecular', 'simulations',
                  'markov state models'),
        author="Carlos Xavier Hernández",
        author_email="*****@*****.**",
        url='https://github.com/cxhernandez/%s' % NAME,
        download_url='https://github.com/cxhernandez/%s/tarball/master' % NAME,
        license='LGPLv2+',
        packages=find_packages(),
        include_package_data=True,
        package_data={
            NAME: ['README.md',
                   'requirements.txt'],
        },
        zip_safe=False,
        **kwargs
    )
示例#5
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文件: setup.py 项目: brookehus/osprey
def main(**kwargs):
    write_version_py(VERSION, ISRELEASED, 'osprey/version.py')

    classifiers = """\
    Development Status :: 3 - Alpha
    Intended Audience :: Science/Research
    License :: OSI Approved :: Apache Software License
    Programming Language :: Python
    Programming Language :: Python :: 2.7
    Programming Language :: Python :: 3
    Programming Language :: Python :: 3.4
    Programming Language :: Python :: 3.5
    Operating System :: Unix
    Operating System :: MacOS
    Operating System :: Microsoft :: Windows
    Topic :: Scientific/Engineering
    Topic :: Scientific/Engineering :: Information Analysis"""
    setup(
        name='osprey',
        author='Robert T. McGibbon',
        author_email='*****@*****.**',
        url='https://github.com/msmbuilder/osprey',
        classifiers=[e.strip() for e in classifiers.splitlines()],
        platforms=["Windows", "Linux", "Mac OS-X", "Unix"],
        license='Apache Software License',
        download_url='https://pypi.python.org/pypi/osprey/',
        version=VERSION,
        packages=find_packages(),
        zip_safe=False,
        package_data={'osprey': ['data/*']},
        entry_points={
            'console_scripts': [
                'osprey = osprey.cli.main:main',
            ],
        },
        **kwargs
    )
示例#6
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文件: setup.py 项目: tony32769/osprey
def main(**kwargs):
    write_version_py(VERSION, ISRELEASED, 'osprey/version.py')

    classifiers = """\
    Development Status :: 3 - Alpha
    Intended Audience :: Science/Research
    License :: OSI Approved :: Apache Software License
    Programming Language :: Python
    Programming Language :: Python :: 2.7
    Programming Language :: Python :: 3
    Programming Language :: Python :: 3.4
    Programming Language :: Python :: 3.5
    Operating System :: Unix
    Operating System :: MacOS
    Operating System :: Microsoft :: Windows
    Topic :: Scientific/Engineering
    Topic :: Scientific/Engineering :: Information Analysis"""
    setup(
        name='osprey',
        author='Robert T. McGibbon',
        author_email='*****@*****.**',
        url='https://github.com/msmbuilder/osprey',
        classifiers=[e.strip() for e in classifiers.splitlines()],
        platforms=["Windows", "Linux", "Mac OS-X", "Unix"],
        license='Apache Software License',
        download_url='https://pypi.python.org/pypi/osprey/',
        version=VERSION,
        packages=find_packages(),
        zip_safe=False,
        package_data={'osprey': ['data/*']},
        entry_points={
            'console_scripts': [
                'osprey = osprey.cli.main:main',
            ],
        },
        **kwargs
    )
示例#7
0
        Extension('mdtraj.geometry.neighborlist',
                  sources=[
                      "mdtraj/geometry/neighborlist.pyx",
                      "mdtraj/geometry/src/neighborlist.cpp"
                  ],
                  include_dirs=[
                      "mdtraj/geometry/include",
                  ],
                  define_macros=define_macros,
                  extra_compile_args=compiler_args,
                  libraries=compiler_libraries,
                  language='c++'),
    ]


write_version_py(VERSION, ISRELEASED, 'mdtraj/version.py')

metadata = \
    dict(name='mdtraj',
      author='Robert McGibbon',
      author_email='*****@*****.**',
      description=DOCLINES[0],
      long_description="\n".join(DOCLINES[2:]),
      version=__version__,
      license='LGPLv2.1+',
      url='http://mdtraj.org',
      download_url = "https://github.com/rmcgibbo/mdtraj/releases/latest",
      platforms=['Linux', 'Mac OS-X', 'Unix', 'Windows'],
      classifiers=CLASSIFIERS.splitlines(),
      packages=find_packages(),
      cmdclass={'build_ext': build_ext},
示例#8
0
文件: setup.py 项目: tjz2026/mdtraj
                      "mdtraj/geometry/src/neighbors.cpp"
                  ],
                  include_dirs=[
                      "mdtraj/geometry/include",
                  ],
                  define_macros=define_macros,
                  extra_compile_args=compiler_args,
                  language='c++'),
    ]


extensions = [xtc, trr, dcd, binpos, dtr]
extensions.extend(rmsd_extensions())
extensions.extend(geometry_extensions())

write_version_py(VERSION, ISRELEASED)
setup(
    name='mdtraj',
    author='Robert McGibbon',
    author_email='*****@*****.**',
    description=DOCLINES[0],
    long_description="\n".join(DOCLINES[2:]),
    version=__version__,
    license='LGPLv2.1+',
    url='http://mdtraj.org',
    download_url="https://github.com/rmcgibbo/mdtraj/releases/latest",
    platforms=['Linux', 'Mac OS-X', 'Unix', 'Windows'],
    classifiers=CLASSIFIERS.splitlines(),
    packages=find_packages(),
    cmdclass={'build_ext': build_ext},
    ext_modules=cythonize(extensions),
示例#9
0
                  pjoin(HMMDIR, 'vonmises.pyx'),
                  pjoin(HMMDIR, 'src/VonMisesHMMFitter.cpp'),
                  pjoin(HMMDIR, 'cephes/i0.c'),
                  pjoin(HMMDIR, 'cephes/chbevl.c')
              ],
              libraries=compiler.compiler_libraries_openmp,
              extra_compile_args=compiler.compiler_args_sse3 +
              compiler.compiler_args_openmp,
              include_dirs=[
                  np.get_include(), HMMDIR,
                  pjoin(HMMDIR, 'src/include/'),
                  pjoin(HMMDIR, 'src/'),
                  pjoin(HMMDIR, 'cephes/')
              ]))

write_version_py(VERSION, ISRELEASED, filename='msmbuilder/version.py')
setup(
    name='msmbuilder',
    author='Robert McGibbon',
    author_email='*****@*****.**',
    description=DOCLINES[0],
    long_description="\n".join(DOCLINES[2:]),
    version=__version__,
    url='https://github.com/msmbuilder/msmbuilder',
    platforms=['Linux', 'Mac OS-X', 'Unix'],
    classifiers=CLASSIFIERS.splitlines(),
    packages=['msmbuilder'] +
    ['msmbuilder.%s' % e for e in find_packages('msmbuilder')],
    package_data={'msmbuilder.tests': ['workflows/*']},
    entry_points={'console_scripts': ['msmb = msmbuilder.scripts.msmb:main']},
    zip_safe=False,
示例#10
0
文件: setup.py 项目: mdtraj/mdtraj
            define_macros=define_macros,
            extra_compile_args=compiler_args,
            libraries=compiler_libraries,
            language='c++'),
        Extension('mdtraj.geometry.neighborlist',
            sources=["mdtraj/geometry/neighborlist.pyx",
                     "mdtraj/geometry/src/neighborlist.cpp"],
            include_dirs=["mdtraj/geometry/include",],
            define_macros=define_macros,
            extra_compile_args=compiler_args,
            libraries=compiler_libraries,
            language='c++'),
        ]


write_version_py(VERSION, ISRELEASED, 'mdtraj/version.py')

metadata = \
    dict(name='mdtraj',
      author='Robert McGibbon',
      author_email='*****@*****.**',
      description=DOCLINES[0],
      long_description="\n".join(DOCLINES[2:]),
      version=__version__,
      license='LGPLv2.1+',
      url='http://mdtraj.org',
      download_url = "https://github.com/rmcgibbo/mdtraj/releases/latest",
      platforms=['Linux', 'Mac OS-X', 'Unix', 'Windows'],
      classifiers=CLASSIFIERS.splitlines(),
      packages=find_packages(),
      cmdclass={'build_ext': build_ext},
示例#11
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            define_macros=define_macros,
            extra_compile_args=compiler_args),
        Extension('mdtraj.geometry.neighbors',
            sources=["mdtraj/geometry/neighbors.pyx",
                     "mdtraj/geometry/src/neighbors.cpp"],
            include_dirs=["mdtraj/geometry/include",],
            define_macros=define_macros,
            extra_compile_args=compiler_args,
            language='c++'),
        ]

extensions = [xtc, trr, dcd, binpos, dtr]
extensions.extend(rmsd_extensions())
extensions.extend(geometry_extensions())

write_version_py(VERSION, ISRELEASED)
setup(name='mdtraj',
      author='Robert McGibbon',
      author_email='*****@*****.**',
      description=DOCLINES[0],
      long_description="\n".join(DOCLINES[2:]),
      version=__version__,
      license='LGPLv2.1+',
      url='http://mdtraj.org',
      download_url = "https://github.com/rmcgibbo/mdtraj/releases/latest",
      platforms=['Linux', 'Mac OS-X', 'Unix', 'Windows'],
      classifiers=CLASSIFIERS.splitlines(),
      packages=find_packages(),
      cmdclass={'build_ext': build_ext},
      ext_modules=cythonize(extensions),
      package_data={'mdtraj.formats.pdb': ['data/*'],
示例#12
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                            pjoin(HMMDIR, 'src/include/'),
                            pjoin(HMMDIR, 'src/')]))

extensions.append(
    Extension('msmbuilder.hmm._vmhmm',
              sources=[pjoin(HMMDIR, 'vonmises/vmhmm.c'),
                       #pjoin(HMMDIR, 'vonmises/test.c'),
                       pjoin(HMMDIR, 'vonmises/vmhmmwrap.pyx'),
                       pjoin(HMMDIR, 'vonmises/spleval.c'),
                       pjoin(HMMDIR, 'cephes/i0.c'),
                       pjoin(HMMDIR, 'cephes/chbevl.c')],
              include_dirs=[np.get_include(),
                            pjoin(HMMDIR, 'cephes'),
                            'msmbuilder/src/f2py']))

write_version_py(VERSION, ISRELEASED, filename='msmbuilder/version.py')
setup(name='msmbuilder',
      author='Robert McGibbon',
      author_email='*****@*****.**',
      description=DOCLINES[0],
      long_description="\n".join(DOCLINES[2:]),
      version=__version__,
      url='https://github.com/msmbuilder/msmbuilder',
      platforms=['Linux', 'Mac OS-X', 'Unix'],
      classifiers=CLASSIFIERS.splitlines(),
      packages=['msmbuilder'] + ['msmbuilder.%s' % e for e in
                              find_packages('msmbuilder')],
      package_data={'msmbuilder.tests': ['workflows/*']},
      entry_points={'console_scripts':
              ['msmb = msmbuilder.scripts.msmb:main']},
      zip_safe=False,
示例#13
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from setuptools import setup, find_packages
from basesetup import write_version_py

VERSION = "0.1alpha"
ISRELEASED = False

write_version_py(VERSION, ISRELEASED, 'gui/version.py')

setup(
    name="deepchem-gui",
    version=VERSION,
    packages=find_packages(),
    include_package_data=True,
    package_data={
        'deepchem-gui': ['static/deepchem-gui/*', 'static/ngl/*']
    },
    entry_points={
        'console_scripts': [
            'deepchem-gui = gui.cli.main:main',
        ],
    },
    platforms=["Linux", "Unix"],
    author="Prasad Kawthekar",
    author_email="*****@*****.**",
    description="DeepChem GUI",
    license="GPL-3.0",
)
示例#14
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from setuptools import setup, find_packages
from basesetup import write_version_py

VERSION = "0.1alpha"
ISRELEASED = False

write_version_py(VERSION, ISRELEASED, 'gui/version.py')

setup(
    name="deepchem-gui",
    version=VERSION,
    packages=find_packages(),
    include_package_data=True,
    package_data={'deepchem-gui': ['static/deepchem-gui/*', 'static/ngl/*']},
    entry_points={
        'console_scripts': [
            'deepchem-gui = gui.cli.main:main',
        ],
    },
    platforms=["Linux", "Unix"],
    author="Prasad Kawthekar",
    author_email="*****@*****.**",
    description="DeepChem GUI",
    license="GPL-3.0",)