def test_auto_scatter(loop): # noqa: F811
np = pytest.importorskip('numpy')
data = np.ones(int(1e7), dtype=np.uint8)
def count_events(event_name, client):
worker_events = client.run(lambda dask_worker: dask_worker.log)
event_counts = {}
for w, events in worker_events.items():
event_counts[w] = len([event for event in list(events)
if event[1] == event_name])
return event_counts
with cluster() as (s, [a, b]):
with Client(s['address'], loop=loop) as client:
with parallel_backend('dask') as (ba, _):
# Passing the same data as arg and kwarg triggers a single
# scatter operation whose result is reused.
Parallel()(delayed(noop)(data, data, i, opt=data)
for i in range(5))
# By default large array are automatically scattered with
# broadcast=1 which means that one worker must directly receive
# the data from the scatter operation once.
counts = count_events('receive-from-scatter', client)
assert counts[a['address']] + counts[b['address']] == 1
with cluster() as (s, [a, b]):
with Client(s['address'], loop=loop) as client:
with parallel_backend('dask') as (ba, _):
Parallel()(delayed(noop)(data[:3], i) for i in range(5))
# Small arrays are passed within the task definition without going
# through a scatter operation.
counts = count_events('receive-from-scatter', client)
assert counts[a['address']] == 0
assert counts[b['address']] == 0
def test_local_client(loop):
def produce(n):
with local_client() as c:
x = c.channel('x')
for i in range(n):
future = c.submit(slowinc, i, delay=0.01, key='f-%d' % i)
x.append(future)
x.flush()
def consume():
with local_client() as c:
x = c.channel('x')
y = c.channel('y')
last = 0
for i, future in enumerate(x):
last = c.submit(add, future, last, key='add-' + future.key)
y.append(last)
with cluster() as (s, [a, b]):
with Client(('127.0.0.1', s['port']), loop=loop) as c:
x = c.channel('x')
y = c.channel('y')
producers = (c.submit(produce, 5), c.submit(produce, 10))
consumer = c.submit(consume)
results = []
for i, future in enumerate(take(15, y)):
result = future.result()
results.append(result)
assert len(results) == 15
assert all(0 < r < 100 for r in results)
def test_stop(loop):
def produce(n):
with local_client() as c:
x = c.channel('x')
for i in range(n):
future = c.submit(slowinc, i, delay=0.01, key='f-%d' % i)
x.append(future)
x.stop()
x.flush()
with cluster() as (s, [a, b]):
with Client(('127.0.0.1', s['port']), loop=loop) as c:
x = c.channel('x')
producer = c.submit(produce, 5)
futures = list(x)
assert len(futures) == 5
with pytest.raises(StopIteration):
x.append(c.submit(inc, 1))
with Client(('127.0.0.1', s['port']), loop=loop) as c2:
xx = c2.channel('x')
futures = list(xx)
assert len(futures) == 5
def test_nested_backend_context_manager(loop): # noqa: F811
def get_nested_pids():
pids = set(Parallel(n_jobs=2)(delayed(os.getpid)() for _ in range(2)))
pids |= set(Parallel(n_jobs=2)(delayed(os.getpid)() for _ in range(2)))
return pids
with cluster() as (s, [a, b]):
with Client(s['address'], loop=loop) as client:
with parallel_backend('dask') as (ba, _):
pid_groups = Parallel(n_jobs=2)(
delayed(get_nested_pids)()
for _ in range(10)
)
for pid_group in pid_groups:
assert len(set(pid_group)) <= 2
# No deadlocks
with Client(s['address'], loop=loop) as client: # noqa: F841
with parallel_backend('dask') as (ba, _):
pid_groups = Parallel(n_jobs=2)(
delayed(get_nested_pids)()
for _ in range(10)
)
for pid_group in pid_groups:
assert len(set(pid_group)) <= 2
def test_dataframe_groupby_tasks(loop):
df = pd.util.testing.makeTimeDataFrame()
df["A"] = df.A // 0.1
df["B"] = df.B // 0.1
ddf = dd.from_pandas(df, npartitions=10)
with cluster() as (c, [a, b]):
with Client(("127.0.0.1", c["port"]), loop=loop) as c:
with dask.set_options(get=c.get):
for ind in [lambda x: "A", lambda x: x.A]:
a = df.groupby(ind(df)).apply(len)
b = ddf.groupby(ind(ddf)).apply(len)
assert_equal(a, b.compute(get=dask.get).sort_index())
assert not any("partd" in k[0] for k in b.dask)
a = df.groupby(ind(df)).B.apply(len)
b = ddf.groupby(ind(ddf)).B.apply(len)
assert_equal(a, b.compute(get=dask.get).sort_index())
assert not any("partd" in k[0] for k in b.dask)
with pytest.raises(NotImplementedError):
ddf.groupby(ddf[["A", "B"]]).apply(len)
a = df.groupby(["A", "B"]).apply(len)
b = ddf.groupby(["A", "B"]).apply(len)
assert_equal(a, b.compute(get=dask.get).sort_index())
def test_dont_assume_function_purity(loop):
with cluster() as (s, [a, b]):
with parallel_backend('distributed', loop=loop,
scheduler_host=('127.0.0.1', s['port'])):
x, y = Parallel()(delayed(random2)() for i in range(2))
assert x != y
def test_dataframe_groupby_tasks(loop):
df = pd.util.testing.makeTimeDataFrame()
df['A'] = df.A // 0.1
df['B'] = df.B // 0.1
ddf = dd.from_pandas(df, npartitions=10)
with cluster() as (c, [a, b]):
with Executor(('127.0.0.1', c['port']), loop=loop) as e:
with dask.set_options(get=e.get):
for ind in [lambda x: 'A', lambda x: x.A]:
a = df.groupby(ind(df)).apply(len)
b = ddf.groupby(ind(ddf)).apply(len)
assert_equal(a, b.compute(get=dask.get).sort_index())
assert not any('partd' in k[0] for k in b.dask)
a = df.groupby(ind(df)).B.apply(len)
b = ddf.groupby(ind(ddf)).B.apply(len)
assert_equal(a, b.compute(get=dask.get).sort_index())
assert not any('partd' in k[0] for k in b.dask)
with pytest.raises(NotImplementedError):
ddf.groupby(ddf[['A', 'B']]).apply(len)
a = df.groupby(['A', 'B']).apply(len)
b = ddf.groupby(['A', 'B']).apply(len)
assert_equal(a, b.compute(get=dask.get).sort_index())
def test_dataframes(loop):
dfs = [pd.DataFrame({'x': np.random.random(100),
'y': np.random.random(100)},
index=list(range(i, i + 100)))
for i in range(0, 100*10, 100)]
with cluster() as (c, [a, b]):
with Executor(('127.0.0.1', c['port']), loop=loop) as e:
remote_dfs = e.map(lambda x: x, dfs)
rdf = futures_to_dask_dataframe(remote_dfs, divisions=True)
name = 'foo'
ldf = dd.DataFrame({(name, i): df for i, df in enumerate(dfs)},
name, dfs[0].columns,
list(range(0, 1000, 100)) + [999])
assert rdf.divisions == ldf.divisions
tm.assert_frame_equal(rdf.compute(get=e.get),
ldf.compute(get=dask.get))
exprs = [lambda df: df.x.mean(),
lambda df: df.y.std(),
lambda df: df.assign(z=df.x + df.y).drop_duplicates(),
lambda df: df.index,
lambda df: df.x,
lambda df: df.x.cumsum(),
lambda df: df.loc[50:75]]
for f in exprs:
local = f(ldf).compute(get=dask.get)
remote = f(rdf).compute(get=e.get)
assert_equal(local, remote)
def test_dask_persisted_entityset(entityset, capsys):
times = list([datetime(2011, 4, 9, 10, 30, i * 6) for i in range(5)] +
[datetime(2011, 4, 9, 10, 31, i * 9) for i in range(4)] +
[datetime(2011, 4, 9, 10, 40, 0)] +
[datetime(2011, 4, 10, 10, 40, i) for i in range(2)] +
[datetime(2011, 4, 10, 10, 41, i * 3) for i in range(3)] +
[datetime(2011, 4, 10, 11, 10, i * 3) for i in range(2)])
labels = [False] * 3 + [True] * 2 + [False] * 9 + [True] + [False] * 2
cutoff_time = pd.DataFrame({'time': times, 'instance_id': range(17)})
property_feature = IdentityFeature(entityset['log']['value']) > 10
with cluster() as (scheduler, [a, b]):
dkwargs = {'cluster': scheduler['address']}
feature_matrix = calculate_feature_matrix([property_feature],
entityset=entityset,
cutoff_time=cutoff_time,
verbose=True,
chunk_size=.13,
dask_kwargs=dkwargs,
approximate='1 hour')
assert (feature_matrix == labels).values.all()
feature_matrix = calculate_feature_matrix([property_feature],
entityset=entityset,
cutoff_time=cutoff_time,
verbose=True,
chunk_size=.13,
dask_kwargs=dkwargs,
approximate='1 hour')
captured = capsys.readouterr()
assert "Using EntitySet persisted on the cluster as dataset " in captured[0]
assert (feature_matrix == labels).values.all()
def test_scheduler_param_distributed(loop):
X, y = make_classification(n_samples=100, n_features=10, random_state=0)
with cluster() as (s, [a, b]):
with Client(s['address'], loop=loop, set_as_default=False) as client:
gs = dcv.GridSearchCV(MockClassifier(), {'foo_param': [0, 1, 2]},
cv=3, scheduler=client)
gs.fit(X, y)
def test_directed_scatter_sync(loop):
with cluster() as (c, [a, b]):
with Executor(('127.0.0.1', c['port']), loop=loop) as e:
e.scatter([1, 2, 3], workers=[('127.0.0.1', b['port'])])
has_what = sync(e.loop, e.center.has_what)
assert len(has_what[('127.0.0.1', b['port'])]) == 3
assert len(has_what[('127.0.0.1', a['port'])]) == 0
def test_directed_scatter_sync(loop):
with cluster() as (s, [a, b]):
with Executor(('127.0.0.1', s['port']), loop=loop) as e:
futures = e.scatter([1, 2, 3], workers=[('127.0.0.1', b['port'])])
has_what = sync(loop, e.scheduler.has_what)
assert len(has_what[('127.0.0.1', b['port'])]) == 3
assert len(has_what[('127.0.0.1', a['port'])]) == 0
def test_dask_distributed_netcdf_roundtrip(
loop, tmp_netcdf_filename, engine, nc_format):
if engine not in ENGINES:
pytest.skip('engine not available')
chunks = {'dim1': 4, 'dim2': 3, 'dim3': 6}
with cluster() as (s, [a, b]):
with Client(s['address'], loop=loop) as c:
original = create_test_data().chunk(chunks)
if engine == 'scipy':
with pytest.raises(NotImplementedError):
original.to_netcdf(tmp_netcdf_filename,
engine=engine, format=nc_format)
return
original.to_netcdf(tmp_netcdf_filename,
engine=engine, format=nc_format)
with xr.open_dataset(tmp_netcdf_filename,
chunks=chunks, engine=engine) as restored:
assert isinstance(restored.var1.data, da.Array)
computed = restored.compute()
assert_allclose(original, computed)
def test_manual_scatter(loop): # noqa: F811
x = CountSerialized(1)
y = CountSerialized(2)
z = CountSerialized(3)
with cluster() as (s, [a, b]):
with Client(s['address'], loop=loop) as client: # noqa: F841
with parallel_backend('dask', scatter=[x, y]) as (ba, _):
f = delayed(add5)
tasks = [f(x, y, z, d=4, e=5),
f(x, z, y, d=5, e=4),
f(y, x, z, d=x, e=5),
f(z, z, x, d=z, e=y)]
expected = [func(*args, **kwargs)
for func, args, kwargs in tasks]
results = Parallel()(tasks)
# Scatter must take a list/tuple
with pytest.raises(TypeError):
with parallel_backend('dask', loop=loop, scatter=1):
pass
assert results == expected
# Scattered variables only serialized once
assert x.count == 1
assert y.count == 1
assert z.count == 4
def test_read_csv_sync(loop):
import dask.dataframe as dd
import pandas as pd
with cluster(nworkers=3) as (s, [a, b, c]):
with make_hdfs() as (hdfs, basedir):
with hdfs.open('%s/1.csv' % basedir, 'wb') as f:
f.write(b'name,amount,id\nAlice,100,1\nBob,200,2')
with hdfs.open('%s/2.csv' % basedir, 'wb') as f:
f.write(b'name,amount,id\nCharlie,300,3\nDennis,400,4')
with Client(('127.0.0.1', s['port']), loop=loop) as e:
values = dd.read_csv('hdfs://%s/*.csv' % basedir,
lineterminator='\n',
collection=False, header=0)
futures = e.compute(values)
assert all(isinstance(f, Future) for f in futures)
L = e.gather(futures)
assert isinstance(L[0], pd.DataFrame)
assert list(L[0].columns) == ['name', 'amount', 'id']
df = dd.read_csv('hdfs://%s/*.csv' % basedir,
lineterminator='\n',
collection=True, header=0)
assert isinstance(df, dd.DataFrame)
assert list(df.head().iloc[0]) == ['Alice', 100, 1]
def test_dask_distributed_read_netcdf_integration_test(loop, engine, autoclose,
nc_format):
if engine == 'h5netcdf' and autoclose:
pytest.skip('h5netcdf does not support autoclose')
if nc_format not in NC_FORMATS[engine]:
pytest.skip('invalid format for engine')
chunks = {'dim1': 4, 'dim2': 3, 'dim3': 6}
with create_tmp_file(allow_cleanup_failure=ON_WINDOWS) as filename:
with cluster() as (s, [a, b]):
with Client(s['address'], loop=loop) as c:
original = create_test_data()
original.to_netcdf(filename, engine=engine, format=nc_format)
with xr.open_dataset(filename,
chunks=chunks,
engine=engine,
autoclose=autoclose) as restored:
assert isinstance(restored.var1.data, da.Array)
computed = restored.compute()
assert_allclose(original, computed)
def test_gather_after_failed_worker(loop):
with cluster(active_rpc_timeout=10) as (s, [a, b]):
with Client(s['address'], loop=loop) as c:
L = c.map(inc, range(10))
wait(L)
a['proc']().terminate()
result = c.gather(L)
assert result == list(map(inc, range(10)))
def test_submit_after_failed_worker_sync(loop):
with cluster(active_rpc_timeout=10) as (s, [a, b]):
with Client(s['address'], loop=loop) as c:
L = c.map(inc, range(10))
wait(L)
a['proc']().terminate()
total = c.submit(sum, L)
assert total.result() == sum(map(inc, range(10)))
def test_gather_after_failed_worker():
with cluster() as (c, [a, b]):
with Executor(('127.0.0.1', c['port'])) as e:
L = e.map(inc, range(10))
wait(L)
a['proc'].terminate()
result = e.gather(L)
assert result == list(map(inc, range(10)))
def test_submit_after_failed_worker(loop):
with cluster() as (s, [a, b]):
with Client(('127.0.0.1', s['port']), loop=loop) as c:
L = c.map(inc, range(10))
wait(L)
a['proc'].terminate()
total = c.submit(sum, L)
assert total.result() == sum(map(inc, range(10)))
def test_gather_after_failed_worker(loop):
with cluster() as (s, [a, b]):
with Client(('127.0.0.1', s['port']), loop=loop) as c:
L = c.map(inc, range(10))
wait(L)
a['proc'].terminate()
result = c.gather(L)
assert result == list(map(inc, range(10)))
def test_futures_to_delayed_bag(loop):
db = pytest.importorskip('dask.bag')
L = [1, 2, 3]
with cluster() as (s, [a, b]):
with Client(s['address'], loop=loop) as c: # flake8: noqa
futures = c.scatter([L, L])
b = db.from_delayed(futures)
assert list(b) == L + L
def test_fast(loop):
with cluster() as (c, [a, b]):
with Executor(('127.0.0.1', c['port']), loop=loop) as e:
L = e.map(inc, range(100))
L2 = e.map(dec, L)
L3 = e.map(add, L, L2)
p = progress(L3, multi=True, complete=True, notebook=True)
assert set(p.all_keys) == {'inc', 'dec', 'add'}
def test_stress_gc(loop, func, n):
with cluster() as (s, [a, b]):
with Client(s['address'], loop=loop) as c:
x = c.submit(func, 1)
for i in range(n):
x = c.submit(func, x)
assert x.result() == n + 2
def test_stress_gc():
with cluster() as (c, [a, b]):
with Executor(('127.0.0.1', c['port']), delete_batch_time=0.5) as e:
x = e.submit(slowinc, 1)
for i in range(20): # this could be increased
x = e.submit(slowinc, x)
assert x.result() == 22
def test_progress_function(loop, capsys):
with cluster() as (c, [a, b]):
with Executor(('127.0.0.1', c['port']), loop=loop) as e:
f = e.submit(lambda: 1)
g = e.submit(lambda: 2)
progress([[f], [[g]]], notebook=False)
check_bar_completed(capsys)
def test_Future_exception_sync(loop):
with cluster() as (c, [a, b]):
with Executor(('127.0.0.1', c['port']), loop=loop) as e:
x = e.submit(div, 1, 0)
assert isinstance(x.exception(), ZeroDivisionError)
x = e.submit(div, 1, 1)
assert x.exception() is None
def test_submit_after_failed_worker():
with cluster() as (c, [a, b]):
with Executor(('127.0.0.1', c['port'])) as e:
L = e.map(inc, range(10))
wait(L)
a['proc'].terminate()
total = e.submit(sum, L)
assert total.result() == sum(map(inc, range(10)))
def test_dask_distributed_rasterio_integration_test(loop):
with create_tmp_geotiff() as (tmp_file, expected):
with cluster() as (s, [a, b]):
with Client(s['address'], loop=loop) as c:
da_tiff = xr.open_rasterio(tmp_file, chunks={'band': 1})
assert isinstance(da_tiff.data, da.Array)
actual = da_tiff.compute()
assert_allclose(actual, expected)
def test_read_text_bucket_key_inputs(loop):
with cluster() as (s, [a, b]):
with Executor(('127.0.0.1', s['port']), loop=loop) as e:
a = read_text(test_bucket_name, '/text/accounts', lazy=True)
b = read_text(test_bucket_name, 'text/accounts', lazy=True)
c = read_text(test_bucket_name + '/text/accounts', lazy=True)
assert a._keys() == b._keys() == c._keys()
def test_get_worker_name(loop):
with cluster() as (s, [a, b]):
with Client(s['address'], loop=loop) as c:
def f():
get_client().submit(inc, 1).result()
c.run(f)
def func(dask_scheduler):
return list(dask_scheduler.clients)
start = time()
while not any('worker' in n for n in c.run_on_scheduler(func)):
sleep(0.1)
assert time() < start + 10
def test_as_completed_repeats(loop):
with cluster() as (s, [a, b]):
with Client(s['address'], loop=loop) as c:
ac = as_completed()
x = c.submit(inc, 1)
ac.add(x)
ac.add(x)
assert next(ac) is x
assert next(ac) is x
with pytest.raises(StopIteration):
next(ac)
ac.add(x)
assert next(ac) is x
def test_traceback_sync(loop):
with cluster() as (s, [a, b]):
with Executor(('127.0.0.1', s['port']), loop=loop) as e:
x = e.submit(div, 1, 0)
tb = x.traceback()
if sys.version_info[0] >= 3:
assert any('x / y' in line for line in tb)
y = e.submit(inc, x)
tb2 = y.traceback()
assert set(tb2).issuperset(set(tb))
z = e.submit(div, 1, 2)
tb = z.traceback()
assert tb is None
def test_regressor(xgboost_loop): # noqa
with cluster() as (s, [a, b]):
with Client(s['address'], loop=xgboost_loop):
a = dxgb.XGBRegressor()
X2 = da.from_array(X, 5)
y2 = da.from_array(y, 5)
weight1 = da.from_array(weight, 5)
a.fit(X2, y2, sample_weight=weight1)
p1 = a.predict(X2)
b = xgb.XGBRegressor()
b.fit(X, y, sample_weight=weight)
np.testing.assert_array_almost_equal(a.feature_importances_,
b.feature_importances_)
assert_eq(p1, b.predict(X))
def test_avro_sync(loop):
avro_files = {
'/tmp/test/1.avro': avro_bytes,
'/tmp/test/2.avro': avro_bytes
}
with make_hdfs() as hdfs:
for k, v in avro_files.items():
with hdfs.open(k, 'wb') as f:
f.write(v)
with cluster(nworkers=1) as (s, [a]):
with Executor(('127.0.0.1', s['port']), loop=loop) as e:
futures = read_avro('/tmp/test/*.avro', lazy=False)
assert all(isinstance(f, Future) for f in futures)
L = e.gather(futures)
assert L[0][:5] == data[:5]
def test_classifier_local_predict(loop, listen_port): #noqa
with cluster() as (s, [a, b]):
with Client(s['address'], loop=loop):
X, y, w, dX, dy, dw = _create_data('classification', output="array")
a = dlgbm.LGBMClassifier(local_listen_port=listen_port)
a = a.fit(dX, dy, sample_weight=dw)
p1 = a.to_local().predict(dX)
b = lightgbm.LGBMClassifier()
b.fit(X, y, sample_weight=w)
p2 = b.predict(X)
assert_eq(p1, p2)
assert_eq(y, p1)
assert_eq(y, p2)
def test_gather_then_submit_after_failed_workers(loop):
with cluster(nworkers=4) as (s, [w, x, y, z]):
with Executor(('127.0.0.1', s['port']), loop=loop) as e:
L = e.map(inc, range(20))
wait(L)
w['proc'].terminate()
total = e.submit(sum, L)
wait([total])
(_, port) = first(e.scheduler.who_has[total.key])
for d in [x, y, z]:
if d['port'] == port:
d['proc'].terminate()
result = e.gather([total])
assert result == [sum(map(inc, range(20)))]
def test_futures_to_dask_array(loop):
with cluster() as (s, [a, b]):
with Client(s['address'], loop=loop) as c:
remote_arrays = [[c.submit(np.full, (3, 3), i + j)
for i in range(3)]
for j in range(3)]
x = futures_to_dask_array(remote_arrays, client=c)
assert x.chunks == ((3, 3, 3), (3, 3, 3))
assert x.dtype == np.full((), 0).dtype
assert x.sum().compute(get=c.get) == 162
assert (x + x.T).sum().compute(get=c.get) == 162 * 2
y = futures_to_collection(remote_arrays, client=c)
assert x.dask == y.dask
def test_futures_to_dask_array(loop):
with cluster() as (c, [a, b]):
with Executor(('127.0.0.1', c['port']), loop=loop) as e:
remote_arrays = [[
e.submit(np.full, (3, 3), i + j) for i in range(3)
] for j in range(3)]
x = futures_to_dask_array(remote_arrays, executor=e)
assert x.chunks == ((3, 3, 3), (3, 3, 3))
assert x.dtype == np.full((), 0).dtype
assert x.sum().compute(get=e.get) == 162
assert (x + x.T).sum().compute(get=e.get) == 162 * 2
y = futures_to_collection(remote_arrays, executor=e)
assert x.dask == y.dask
def test_start_ipython_scheduler_magic(loop, zmq_ctx):
with cluster(1) as (s, [a]):
with Client(s["address"], loop=loop) as e, mock_ipython() as ip:
info = e.start_ipython_scheduler()
expected = [
{"magic_kind": "line", "magic_name": "scheduler"},
{"magic_kind": "cell", "magic_name": "scheduler"},
]
call_kwargs_list = [
kwargs for (args, kwargs) in ip.register_magic_function.call_args_list
]
assert call_kwargs_list == expected
magic = ip.register_magic_function.call_args_list[0][0][0]
magic(line="", cell="scheduler")
def test_read_text_bucket_key_inputs(loop):
with cluster() as (s, [a, b]):
with Executor(('127.0.0.1', s['port']), loop=loop) as e:
a = read_text(test_bucket_name,
'/test/accounts*',
lazy=True,
anon=True)
b = read_text(test_bucket_name,
'test/accounts*',
lazy=True,
anon=True)
c = read_text(test_bucket_name + '/test/accounts*',
lazy=True,
anon=True)
assert a._keys() == b._keys() == c._keys()
def test_start_ipython_remote(loop, zmq_ctx):
from distributed._ipython_utils import remote_magic
with cluster(1) as (s, [a]):
with Client(s["address"], loop=loop) as e, mock_ipython() as ip:
worker = first(e.nthreads())
ip.user_ns["info"] = e.start_ipython_workers(worker)[worker]
remote_magic("info 1") # line magic
remote_magic("info", "worker") # cell magic
expected = [
((remote_magic,), {"magic_kind": "line", "magic_name": "remote"}),
((remote_magic,), {"magic_kind": "cell", "magic_name": "remote"}),
]
assert ip.register_magic_function.call_args_list == expected
assert ip.register_magic_function.call_count == 2
def test_start_ipython_workers(loop, zmq_ctx):
from jupyter_client import BlockingKernelClient
with cluster(1) as (s, [a]):
with Client(s["address"], loop=loop) as e:
info_dict = e.start_ipython_workers()
info = first(info_dict.values())
kc = BlockingKernelClient()
kc.load_connection_info(info)
kc.start_channels()
kc.wait_for_ready(timeout=10)
msg_id = kc.execute("worker")
reply = kc.get_shell_msg(timeout=10)
assert reply["parent_header"]["msg_id"] == msg_id
assert reply["content"]["status"] == "ok"
kc.stop_channels()
def test_occupancy(loop):
with cluster(nanny=True) as (s, [a, b]):
rm = Occupancy(('127.0.0.1', s['port']), interval=0.01)
for k in ['host', 'processing', 'waiting']:
assert k in rm.cds.data
start = time()
while not rm.cds.data['host']:
loop.run_sync(lambda: gen.sleep(0.05))
assert time() < start + 2
assert (len(rm.cds.data['host']) == len(rm.cds.data['processing']) ==
len(rm.cds.data['waiting']) == 2)
assert isinstance(rm.figure, Figure)
rm.stream.close()
def test_start_ipython_workers_magic(loop, zmq_ctx):
with cluster(2) as (s, [a, b]):
with Executor(('127.0.0.1', s['port']),
loop=loop) as e, mock_ipython() as ip:
workers = list(e.ncores())[:2]
names = ['magic%i' % i for i in range(len(workers))]
info_dict = e.start_ipython_workers(workers, magic_names=names)
expected = [
{
'magic_kind': 'line',
'magic_name': 'remote'
},
{
'magic_kind': 'cell',
'magic_name': 'remote'
},
{
'magic_kind': 'line',
'magic_name': 'magic0'
},
{
'magic_kind': 'cell',
'magic_name': 'magic0'
},
{
'magic_kind': 'line',
'magic_name': 'magic1'
},
{
'magic_kind': 'cell',
'magic_name': 'magic1'
},
]
call_kwargs_list = [
kwargs
for (args, kwargs) in ip.register_magic_function.call_args_list
]
assert call_kwargs_list == expected
assert ip.register_magic_function.call_count == 6
magics = [
args[0][0]
for args in ip.register_magic_function.call_args_list[2:]
]
magics[-1](line="", cell="worker")
[m.client.stop_channels() for m in magics]
def test_start_ipython_workers(loop, zmq_ctx):
from jupyter_client import BlockingKernelClient
with cluster(1) as (s, [a]):
with Executor(('127.0.0.1', s['port']), loop=loop) as e:
info_dict = e.start_ipython_workers()
info = first(info_dict.values())
key = info.pop('key')
kc = BlockingKernelClient(**info)
kc.session.key = key
kc.start_channels()
kc.wait_for_ready(timeout=10)
msg_id = kc.execute("worker")
reply = kc.get_shell_msg(timeout=10)
assert reply['parent_header']['msg_id'] == msg_id
assert reply['content']['status'] == 'ok'
kc.stop_channels()
def test_distributed_persist(loop, dask_array):
"""Test persist() for distributed machines."""
q = ureg.Quantity(dask_array, units_)
with cluster() as (s, [a, b]):
with Client(s["address"], loop=loop):
comps = add_five(q)
persisted_q = comps.persist()
comps_truth = dask_array + 5
persisted_truth = comps_truth.persist()
assert np.all(persisted_q.m == persisted_truth)
assert dask.is_dask_collection(persisted_q)
assert persisted_q.units == units_
assert q.magnitude is dask_array
def test_classifier_proba(loop, output, listen_port, centers):
with cluster() as (s, [a, b]):
with Client(s['address'], loop=loop) as client:
X, y, w, dX, dy, dw = _create_data('classification',
output=output,
centers=centers)
a = dlgbm.LGBMClassifier(local_listen_port=listen_port)
a = a.fit(dX, dy, sample_weight=dw)
p1 = a.predict_proba(dX, client=client)
p1 = p1.compute()
b = lightgbm.LGBMClassifier()
b.fit(X, y, sample_weight=w)
p2 = b.predict_proba(X)
assert_eq(p1, p2, atol=0.3)
def test_restart_sync(loop):
with cluster(nanny=True) as (s, [a, b]):
with Client(s["address"], loop=loop) as c:
x = c.submit(div, 1, 2)
x.result()
assert sync(loop, c.scheduler.who_has)
c.restart()
assert not sync(loop, c.scheduler.who_has)
assert x.cancelled()
assert len(c.nthreads()) == 2
with pytest.raises(CancelledError):
x.result()
y = c.submit(div, 1, 3)
assert y.result() == 1 / 3
def test_start_ipython_workers_magic(loop, zmq_ctx):
with cluster(2) as (s, [a, b]):
with Client(s["address"], loop=loop) as e, mock_ipython() as ip:
workers = list(e.nthreads())[:2]
names = ["magic%i" % i for i in range(len(workers))]
info_dict = e.start_ipython_workers(workers, magic_names=names)
expected = [
{
"magic_kind": "line",
"magic_name": "remote"
},
{
"magic_kind": "cell",
"magic_name": "remote"
},
{
"magic_kind": "line",
"magic_name": "magic0"
},
{
"magic_kind": "cell",
"magic_name": "magic0"
},
{
"magic_kind": "line",
"magic_name": "magic1"
},
{
"magic_kind": "cell",
"magic_name": "magic1"
},
]
call_kwargs_list = [
kwargs
for (args, kwargs) in ip.register_magic_function.call_args_list
]
assert call_kwargs_list == expected
assert ip.register_magic_function.call_count == 6
magics = [
args[0][0]
for args in ip.register_magic_function.call_args_list[2:]
]
magics[-1](line="", cell="worker")
[m.client.stop_channels() for m in magics]
def test_futures_to_delayed_array(loop):
da = pytest.importorskip("dask.array")
from dask.array.utils import assert_eq
np = pytest.importorskip("numpy")
x = np.arange(5)
with cluster() as (s, [a, b]):
with Client(s["address"], loop=loop) as c:
futures = c.scatter([x, x])
A = da.concatenate(
[
da.from_delayed(f, shape=x.shape, dtype=x.dtype)
for f in futures
],
axis=0,
)
assert_eq(A.compute(), np.concatenate([x, x], axis=0))
def test_values(loop):
with cluster() as (s, [a, b]):
with Client(s['address'], loop=loop) as c:
L = [c.submit(inc, i) for i in range(5)]
wait(L)
p = MultiProgressWidget(L)
sync(loop, p.listen)
assert set(p.bars) == {'inc'}
assert p.status == 'finished'
assert p.comm.closed()
assert '5 / 5' in p.bar_texts['inc'].value
assert p.bars['inc'].value == 1.0
x = c.submit(throws, 1)
p = MultiProgressWidget([x])
sync(loop, p.listen)
assert p.status == 'error'
def test_regressor_local_predict(loop, listen_port):
with cluster() as (s, [a, b]):
with Client(s['address'], loop=loop):
X, y, w, dX, dy, dw = _create_data('regression', output="array")
a = dlgbm.LGBMRegressor(local_listen_port=listen_port, seed=42)
a = a.fit(dX, dy, sample_weight=dw)
p1 = a.predict(dX)
p2 = a.to_local().predict(X)
s1 = r2_score(dy, p1)
p1 = p1.compute()
s2 = a.to_local().score(X, y)
print(s1)
# Predictions and scores should be the same
assert_eq(p1, p2)
np.isclose(s1, s2)
def test_simple(loop, joblib):
if joblib is None:
pytest.skip()
Parallel = joblib.Parallel
delayed = joblib.delayed
with cluster() as (s, [a, b]):
with Client(s['address'], loop=loop) as client:
with joblib.parallel_backend('dask') as (ba, _):
seq = Parallel()(delayed(inc)(i) for i in range(10))
assert seq == [inc(i) for i in range(10)]
with pytest.raises(ValueError):
Parallel()(delayed(slow_raise_value_error)(i == 3)
for i in range(10))
seq = Parallel()(delayed(inc)(i) for i in range(10))
assert seq == [inc(i) for i in range(10)]
def test_read_csv_sync_compute(loop):
import dask.dataframe as dd
import pandas as pd
with cluster(nworkers=1) as (s, [a]):
with make_hdfs() as hdfs:
with hdfs.open('/tmp/test/1.csv', 'wb') as f:
f.write(b'name,amount,id\nAlice,100,1\nBob,200,2')
with hdfs.open('/tmp/test/2.csv', 'wb') as f:
f.write(b'name,amount,id\nCharlie,300,3\nDennis,400,4')
with Executor(('127.0.0.1', s['port']), loop=loop) as e:
for lazy in [True, False]:
df = read_csv('/tmp/test/*.csv',
collection=True,
lazy=lazy)
assert df.amount.sum().compute(get=e.get) == 1000
def test_values(loop):
with cluster() as (s, [a, b]):
with Executor(('127.0.0.1', s['port']), loop=loop) as e:
L = [e.submit(inc, i) for i in range(5)]
wait(L)
p = MultiProgressWidget(L)
sync(loop, p.listen)
assert set(p.bars) == {'inc'}
assert p.status == 'finished'
assert p.stream.closed()
assert '5 / 5' in p.bar_texts['inc'].value
assert p.bars['inc'].value == 1.0
x = e.submit(throws, 1)
p = MultiProgressWidget([x])
sync(loop, p.listen)
assert p.status == 'error'
def test_restart_sync(loop):
with cluster(nanny=True) as (s, [a, b]):
with Executor(('127.0.0.1', s['port']), loop=loop) as e:
x = e.submit(div, 1, 2)
x.result()
assert sync(loop, e.scheduler.who_has)
e.restart()
assert not sync(loop, e.scheduler.who_has)
assert x.cancelled()
assert len(e.ncores()) == 2
with pytest.raises(CancelledError):
x.result()
y = e.submit(div, 1, 3)
assert y.result() == 1 / 3
def test_text_progressbar(capsys, loop):
with cluster(nanny=True) as (s, [a, b]):
with Client(('127.0.0.1', s['port']), loop=loop) as c:
futures = c.map(inc, range(10))
p = TextProgressBar(futures, interval=0.01, complete=True)
c.gather(futures)
start = time()
while p.status != 'finished':
sleep(0.01)
assert time() - start < 5
check_bar_completed(capsys)
assert p._last_response == {'all': 10,
'remaining': 0,
'status': 'finished'}
assert p.stream.closed()
def test_sync(loop):
with cluster() as (s, [a, b]):
with Client(s['address'], loop=loop) as c:
counter = c.submit(Counter, actor=True)
counter = counter.result()
assert counter.n == 0
future = counter.increment()
n = future.result()
assert n == 1
assert counter.n == 1
assert future.result() == future.result()
assert 'ActorFuture' in repr(future)
assert 'distributed.actor' not in repr(future)
def test_as_completed_distributed(loop): # noqa
cluster_kwargs = dict(active_rpc_timeout=10, nanny=Nanny)
if DISTRIBUTED_2_11_0:
cluster_kwargs["disconnect_timeout"] = 10
with cluster(**cluster_kwargs) as (s, [a, b]):
with Client(s["address"], loop=loop) as c:
counter_name = "counter_name"
counter = Variable(counter_name, client=c)
counter.set(0)
lock_name = "lock"
killed_workers_name = "killed_workers"
killed_workers = Variable(killed_workers_name, client=c)
killed_workers.set({})
X, y = make_classification(n_samples=100,
n_features=10,
random_state=0)
gs = dcv.GridSearchCV(
AsCompletedEstimator(killed_workers_name, lock_name,
counter_name, 7),
param_grid={"foo_param": [0, 1, 2]},
cv=3,
refit=False,
cache_cv=False,
scheduler=c,
)
gs.fit(X, y)
def f(dask_scheduler):
return dask_scheduler.transition_log
def check_reprocess(transition_log):
finished = set()
for transition in transition_log:
key, start_state, end_state = (
transition[0],
transition[1],
transition[2],
)
assert key not in finished
if ("score" in key and start_state == "memory"
and end_state == "forgotten"):
finished.add(key)
check_reprocess(c.run_on_scheduler(f))
