def upload(self, trans, **kwd): params = util.Params(kwd) message = util.restore_text(params.get('message', '')) status = params.get('status', 'done') commit_message = util.restore_text( params.get('commit_message', 'Uploaded')) category_ids = util.listify(params.get('category_id', '')) categories = suc.get_categories(trans) repository_id = params.get('repository_id', '') repository = suc.get_repository_in_tool_shed(trans, repository_id) repo_dir = repository.repo_path(trans.app) repo = hg.repository(suc.get_configured_ui(), repo_dir) uncompress_file = util.string_as_bool( params.get('uncompress_file', 'true')) remove_repo_files_not_in_tar = util.string_as_bool( params.get('remove_repo_files_not_in_tar', 'true')) uploaded_file = None upload_point = self.__get_upload_point(repository, **kwd) tip = repository.tip(trans.app) file_data = params.get('file_data', '') url = params.get('url', '') # Part of the upload process is sending email notification to those that have registered to # receive them. One scenario occurs when the first change set is produced for the repository. # See the suc.handle_email_alerts() method for the definition of the scenarios. new_repo_alert = repository.is_new(trans.app) uploaded_directory = None if params.get('upload_button', False): if file_data == '' and url == '': message = 'No files were entered on the upload form.' status = 'error' uploaded_file = None elif url and url.startswith('hg'): # Use mercurial clone to fetch repository, contents will then be copied over. uploaded_directory = tempfile.mkdtemp() repo_url = 'http%s' % url[len('hg'):] repo_url = repo_url.encode('ascii', 'replace') commands.clone(suc.get_configured_ui(), repo_url, uploaded_directory) elif url: valid_url = True try: stream = urllib.urlopen(url) except Exception, e: valid_url = False message = 'Error uploading file via http: %s' % str(e) status = 'error' uploaded_file = None if valid_url: fd, uploaded_file_name = tempfile.mkstemp() uploaded_file = open(uploaded_file_name, 'wb') while 1: chunk = stream.read(CHUNK_SIZE) if not chunk: break uploaded_file.write(chunk) uploaded_file.flush() uploaded_file_filename = url.split('/')[-1] isempty = os.path.getsize( os.path.abspath(uploaded_file_name)) == 0 elif file_data not in ('', None): uploaded_file = file_data.file uploaded_file_name = uploaded_file.name uploaded_file_filename = os.path.split(file_data.filename)[-1] isempty = os.path.getsize( os.path.abspath(uploaded_file_name)) == 0 if uploaded_file or uploaded_directory: ok = True isgzip = False isbz2 = False if uploaded_file: if uncompress_file: isgzip = checkers.is_gzip(uploaded_file_name) if not isgzip: isbz2 = checkers.is_bz2(uploaded_file_name) if isempty: tar = None istar = False else: # Determine what we have - a single file or an archive try: if (isgzip or isbz2) and uncompress_file: # Open for reading with transparent compression. tar = tarfile.open(uploaded_file_name, 'r:*') else: tar = tarfile.open(uploaded_file_name) istar = True except tarfile.ReadError, e: tar = None istar = False else: # Uploaded directory istar = False if istar: ok, message, files_to_remove, content_alert_str, undesirable_dirs_removed, undesirable_files_removed = \ self.upload_tar( trans, repository, tar, uploaded_file, upload_point, remove_repo_files_not_in_tar, commit_message, new_repo_alert ) elif uploaded_directory: ok,message, files_to_remove, content_alert_str, undesirable_dirs_removed, undesirable_files_removed = \ self.upload_directory( trans, repository, uploaded_directory, upload_point, remove_repo_files_not_in_tar, commit_message, new_repo_alert ) else: if (isgzip or isbz2) and uncompress_file: uploaded_file_filename = self.uncompress( repository, uploaded_file_name, uploaded_file_filename, isgzip, isbz2) if upload_point is not None: full_path = os.path.abspath( os.path.join(repo_dir, upload_point, uploaded_file_filename)) else: full_path = os.path.abspath( os.path.join(repo_dir, uploaded_file_filename)) # Move the uploaded file to the load_point within the repository hierarchy. shutil.move(uploaded_file_name, full_path) # See if any admin users have chosen to receive email alerts when a repository is # updated. If so, check every uploaded file to ensure content is appropriate. check_contents = suc.check_file_contents(trans) if check_contents and os.path.isfile(full_path): content_alert_str = self.__check_file_content( full_path) else: content_alert_str = '' commands.add(repo.ui, repo, full_path) # Convert from unicode to prevent "TypeError: array item must be char" full_path = full_path.encode('ascii', 'replace') commands.commit(repo.ui, repo, full_path, user=trans.user.username, message=commit_message) if full_path.endswith('tool_data_table_conf.xml.sample'): # Handle the special case where a tool_data_table_conf.xml.sample file is being uploaded by parsing the file and adding new entries # to the in-memory trans.app.tool_data_tables dictionary. error, error_message = suc.handle_sample_tool_data_table_conf_file( trans.app, full_path) if error: message = '%s<br/>%s' % (message, error_message) # See if the content of the change set was valid. admin_only = len(repository.downloadable_revisions) != 1 suc.handle_email_alerts( trans, repository, content_alert_str=content_alert_str, new_repo_alert=new_repo_alert, admin_only=admin_only) if ok: # Update the repository files for browsing. suc.update_repository(repo) # Get the new repository tip. if tip == repository.tip(trans.app): message = 'No changes to repository. ' status = 'warning' else: if (isgzip or isbz2) and uncompress_file: uncompress_str = ' uncompressed and ' else: uncompress_str = ' ' if uploaded_directory: source_type = "repository" source = url else: source_type = "file" source = uploaded_file_filename message = "The %s '%s' has been successfully%suploaded to the repository. " % ( source_type, source, uncompress_str) if istar and (undesirable_dirs_removed or undesirable_files_removed): items_removed = undesirable_dirs_removed + undesirable_files_removed message += " %d undesirable items (.hg .svn .git directories, .DS_Store, hgrc files, etc) were removed from the archive. " % items_removed if istar and remove_repo_files_not_in_tar and files_to_remove: if upload_point is not None: message += " %d files were removed from the repository relative to the selected upload point '%s'. " % ( len(files_to_remove), upload_point) else: message += " %d files were removed from the repository root. " % len( files_to_remove) kwd['message'] = message suc.set_repository_metadata_due_to_new_tip( trans, repository, content_alert_str=content_alert_str, **kwd) # Provide a warning message if a tool_dependencies.xml file is provided, but tool dependencies weren't loaded due to a requirement tag mismatch # or some other problem. if suc.get_config_from_disk('tool_dependencies.xml', repo_dir): if repository.metadata_revisions: # A repository's metadata revisions are order descending by update_time, so the zeroth revision will be the tip just after an upload. metadata_dict = repository.metadata_revisions[ 0].metadata else: metadata_dict = {} if suc.has_orphan_tool_dependencies_in_tool_shed( metadata_dict): message += 'Name, version and type from a tool requirement tag does not match the information in the "tool_dependencies.xml file", ' message += 'so one or more of the defined tool dependencies are considered orphans within this repository.' status = 'warning' # Reset the tool_data_tables by loading the empty tool_data_table_conf.xml file. suc.reset_tool_data_tables(trans.app) trans.response.send_redirect( web.url_for(controller='repository', action='browse_repository', id=repository_id, commit_message='Deleted selected files', message=message, status=status)) else: status = 'error' # Reset the tool_data_tables by loading the empty tool_data_table_conf.xml file. suc.reset_tool_data_tables(trans.app)
def upload( self, trans, **kwd ): params = util.Params( kwd ) message = util.restore_text( params.get( 'message', '' ) ) status = params.get( 'status', 'done' ) commit_message = util.restore_text( params.get( 'commit_message', 'Uploaded' ) ) category_ids = util.listify( params.get( 'category_id', '' ) ) categories = suc.get_categories( trans ) repository_id = params.get( 'repository_id', '' ) repository = suc.get_repository_in_tool_shed( trans, repository_id ) repo_dir = repository.repo_path( trans.app ) repo = hg.repository( suc.get_configured_ui(), repo_dir ) uncompress_file = util.string_as_bool( params.get( 'uncompress_file', 'true' ) ) remove_repo_files_not_in_tar = util.string_as_bool( params.get( 'remove_repo_files_not_in_tar', 'true' ) ) uploaded_file = None upload_point = self.__get_upload_point( repository, **kwd ) tip = repository.tip( trans.app ) file_data = params.get( 'file_data', '' ) url = params.get( 'url', '' ) # Part of the upload process is sending email notification to those that have registered to # receive them. One scenario occurs when the first change set is produced for the repository. # See the suc.handle_email_alerts() method for the definition of the scenarios. new_repo_alert = repository.is_new( trans.app ) uploaded_directory = None if params.get( 'upload_button', False ): if file_data == '' and url == '': message = 'No files were entered on the upload form.' status = 'error' uploaded_file = None elif url and url.startswith( 'hg' ): # Use mercurial clone to fetch repository, contents will then be copied over. uploaded_directory = tempfile.mkdtemp() repo_url = 'http%s' % url[ len( 'hg' ): ] repo_url = repo_url.encode( 'ascii', 'replace' ) commands.clone( suc.get_configured_ui(), repo_url, uploaded_directory ) elif url: valid_url = True try: stream = urllib.urlopen( url ) except Exception, e: valid_url = False message = 'Error uploading file via http: %s' % str( e ) status = 'error' uploaded_file = None if valid_url: fd, uploaded_file_name = tempfile.mkstemp() uploaded_file = open( uploaded_file_name, 'wb' ) while 1: chunk = stream.read( CHUNK_SIZE ) if not chunk: break uploaded_file.write( chunk ) uploaded_file.flush() uploaded_file_filename = url.split( '/' )[ -1 ] isempty = os.path.getsize( os.path.abspath( uploaded_file_name ) ) == 0 elif file_data not in ( '', None ): uploaded_file = file_data.file uploaded_file_name = uploaded_file.name uploaded_file_filename = os.path.split( file_data.filename )[ -1 ] isempty = os.path.getsize( os.path.abspath( uploaded_file_name ) ) == 0 if uploaded_file or uploaded_directory: ok = True isgzip = False isbz2 = False if uploaded_file: if uncompress_file: isgzip = checkers.is_gzip( uploaded_file_name ) if not isgzip: isbz2 = checkers.is_bz2( uploaded_file_name ) if isempty: tar = None istar = False else: # Determine what we have - a single file or an archive try: if ( isgzip or isbz2 ) and uncompress_file: # Open for reading with transparent compression. tar = tarfile.open( uploaded_file_name, 'r:*' ) else: tar = tarfile.open( uploaded_file_name ) istar = True except tarfile.ReadError, e: tar = None istar = False else: # Uploaded directory istar = False if istar: ok, message, files_to_remove, content_alert_str, undesirable_dirs_removed, undesirable_files_removed = \ self.upload_tar( trans, repository, tar, uploaded_file, upload_point, remove_repo_files_not_in_tar, commit_message, new_repo_alert ) elif uploaded_directory: ok,message, files_to_remove, content_alert_str, undesirable_dirs_removed, undesirable_files_removed = \ self.upload_directory( trans, repository, uploaded_directory, upload_point, remove_repo_files_not_in_tar, commit_message, new_repo_alert ) else: if ( isgzip or isbz2 ) and uncompress_file: uploaded_file_filename = self.uncompress( repository, uploaded_file_name, uploaded_file_filename, isgzip, isbz2 ) if upload_point is not None: full_path = os.path.abspath( os.path.join( repo_dir, upload_point, uploaded_file_filename ) ) else: full_path = os.path.abspath( os.path.join( repo_dir, uploaded_file_filename ) ) # Move the uploaded file to the load_point within the repository hierarchy. shutil.move( uploaded_file_name, full_path ) # See if any admin users have chosen to receive email alerts when a repository is # updated. If so, check every uploaded file to ensure content is appropriate. check_contents = suc.check_file_contents( trans ) if check_contents and os.path.isfile( full_path ): content_alert_str = self.__check_file_content( full_path ) else: content_alert_str = '' commands.add( repo.ui, repo, full_path ) # Convert from unicode to prevent "TypeError: array item must be char" full_path = full_path.encode( 'ascii', 'replace' ) commands.commit( repo.ui, repo, full_path, user=trans.user.username, message=commit_message ) if full_path.endswith( 'tool_data_table_conf.xml.sample' ): # Handle the special case where a tool_data_table_conf.xml.sample file is being uploaded by parsing the file and adding new entries # to the in-memory trans.app.tool_data_tables dictionary. error, error_message = suc.handle_sample_tool_data_table_conf_file( trans.app, full_path ) if error: message = '%s<br/>%s' % ( message, error_message ) # See if the content of the change set was valid. admin_only = len( repository.downloadable_revisions ) != 1 suc.handle_email_alerts( trans, repository, content_alert_str=content_alert_str, new_repo_alert=new_repo_alert, admin_only=admin_only ) if ok: # Update the repository files for browsing. suc.update_repository( repo ) # Get the new repository tip. if tip == repository.tip( trans.app ): message = 'No changes to repository. ' status = 'warning' else: if ( isgzip or isbz2 ) and uncompress_file: uncompress_str = ' uncompressed and ' else: uncompress_str = ' ' if uploaded_directory: source_type = "repository" source = url else: source_type = "file" source = uploaded_file_filename message = "The %s '%s' has been successfully%suploaded to the repository. " % ( source_type, source, uncompress_str ) if istar and ( undesirable_dirs_removed or undesirable_files_removed ): items_removed = undesirable_dirs_removed + undesirable_files_removed message += " %d undesirable items (.hg .svn .git directories, .DS_Store, hgrc files, etc) were removed from the archive. " % items_removed if istar and remove_repo_files_not_in_tar and files_to_remove: if upload_point is not None: message += " %d files were removed from the repository relative to the selected upload point '%s'. " % ( len( files_to_remove ), upload_point ) else: message += " %d files were removed from the repository root. " % len( files_to_remove ) kwd[ 'message' ] = message suc.set_repository_metadata_due_to_new_tip( trans, repository, content_alert_str=content_alert_str, **kwd ) # Provide a warning message if a tool_dependencies.xml file is provided, but tool dependencies weren't loaded due to a requirement tag mismatch # or some other problem. if suc.get_config_from_disk( 'tool_dependencies.xml', repo_dir ): if repository.metadata_revisions: # A repository's metadata revisions are order descending by update_time, so the zeroth revision will be the tip just after an upload. metadata_dict = repository.metadata_revisions[0].metadata else: metadata_dict = {} if suc.has_orphan_tool_dependencies_in_tool_shed( metadata_dict ): message += 'Name, version and type from a tool requirement tag does not match the information in the "tool_dependencies.xml file", ' message += 'so one or more of the defined tool dependencies are considered orphans within this repository.' status = 'warning' # Reset the tool_data_tables by loading the empty tool_data_table_conf.xml file. suc.reset_tool_data_tables( trans.app ) trans.response.send_redirect( web.url_for( controller='repository', action='browse_repository', id=repository_id, commit_message='Deleted selected files', message=message, status=status ) ) else: status = 'error' # Reset the tool_data_tables by loading the empty tool_data_table_conf.xml file. suc.reset_tool_data_tables( trans.app )
except OSError, e: # The directory is not empty pass # See if any admin users have chosen to receive email alerts when a repository is # updated. If so, check every uploaded file to ensure content is appropriate. check_contents = suc.check_file_contents(trans) for filename_in_archive in filenames_in_archive: # Check file content to ensure it is appropriate. if check_contents and os.path.isfile(filename_in_archive): content_alert_str += self.__check_file_content( filename_in_archive) commands.add(repo.ui, repo, filename_in_archive) if filename_in_archive.endswith('tool_data_table_conf.xml.sample'): # Handle the special case where a tool_data_table_conf.xml.sample file is being uploaded by parsing the file and adding new entries # to the in-memory trans.app.tool_data_tables dictionary. error, message = suc.handle_sample_tool_data_table_conf_file( trans.app, filename_in_archive) if error: return False, message, files_to_remove, content_alert_str, undesirable_dirs_removed, undesirable_files_removed commands.commit(repo.ui, repo, full_path, user=trans.user.username, message=commit_message) admin_only = len(repository.downloadable_revisions) != 1 suc.handle_email_alerts(trans, repository, content_alert_str=content_alert_str, new_repo_alert=new_repo_alert, admin_only=admin_only) return True, '', files_to_remove, content_alert_str, undesirable_dirs_removed, undesirable_files_removed
os.rmdir( dir ) except OSError, e: # The directory is not empty pass # See if any admin users have chosen to receive email alerts when a repository is # updated. If so, check every uploaded file to ensure content is appropriate. check_contents = suc.check_file_contents( trans ) for filename_in_archive in filenames_in_archive: # Check file content to ensure it is appropriate. if check_contents and os.path.isfile( filename_in_archive ): content_alert_str += self.__check_file_content( filename_in_archive ) commands.add( repo.ui, repo, filename_in_archive ) if filename_in_archive.endswith( 'tool_data_table_conf.xml.sample' ): # Handle the special case where a tool_data_table_conf.xml.sample file is being uploaded by parsing the file and adding new entries # to the in-memory trans.app.tool_data_tables dictionary. error, message = suc.handle_sample_tool_data_table_conf_file( trans.app, filename_in_archive ) if error: return False, message, files_to_remove, content_alert_str, undesirable_dirs_removed, undesirable_files_removed commands.commit( repo.ui, repo, full_path, user=trans.user.username, message=commit_message ) admin_only = len( repository.downloadable_revisions ) != 1 suc.handle_email_alerts( trans, repository, content_alert_str=content_alert_str, new_repo_alert=new_repo_alert, admin_only=admin_only ) return True, '', files_to_remove, content_alert_str, undesirable_dirs_removed, undesirable_files_removed def uncompress( self, repository, uploaded_file_name, uploaded_file_filename, isgzip, isbz2 ): if isgzip: self.__handle_gzip( repository, uploaded_file_name ) return uploaded_file_filename.rstrip( '.gz' ) if isbz2: self.__handle_bz2( repository, uploaded_file_name ) return uploaded_file_filename.rstrip( '.bz2' ) def __handle_gzip( self, repository, uploaded_file_name ): fd, uncompressed = tempfile.mkstemp( prefix='repo_%d_upload_gunzip_' % repository.id, dir=os.path.dirname( uploaded_file_name ), text=False )