def test_piecewise_add(self):
er = ExternalResources('terms')
# this is the term the user wants to use. They will need to specify this
key = er._add_key('mouse')
resource1 = er._add_resource(resource='resource0', uri='resource_uri0')
# the user will have to supply this info as well. This is the information
# needed to retrieve info about the controled term
er._add_entity(key, resource1, '10090', 'uri')
# The user can also pass in the container or it can be wrapped up under NWBFILE
obj = er._add_object('object', 'species')
# This could also be wrapped up under NWBFile
er._add_object_key(obj, key)
self.assertEqual(er.keys.data, [('mouse', )])
self.assertEqual(er.entities.data, [(0, 0, '10090', 'uri')])
self.assertEqual(er.objects.data, [('object', 'species')])
class TestExternalResourcesGetKey(TestCase):
def setUp(self):
self.er = ExternalResources('terms')
def test_get_key(self):
self.er.add_ref('uuid1',
key='key1',
resource_name='resource1',
resource_uri='resource_uri1',
entity_id="id11",
entity_uri='url11')
self.er.add_ref('uuid2',
key='key1',
resource_name='resource2',
resource_uri='resource_uri2',
entity_id="id12",
entity_uri='url21')
keys = self.er.get_key('key1', 'uuid2', '')
self.assertIsInstance(keys, Key)
self.assertEqual(keys.idx, 1)
def test_get_key_bad_arg(self):
self.er._add_key('key2')
self.er.add_ref('uuid1',
key='key1',
resource_name='resource1',
resource_uri='resource_uri1',
entity_id="id11",
entity_uri='url11')
with self.assertRaises(ValueError):
self.er.get_key('key2', 'uuid1', '')
@unittest.skip('Outdated do to privatization')
def test_get_key_without_container(self):
self.er = ExternalResources('terms')
self.er._add_key('key1')
keys = self.er.get_key('key1')
self.assertIsInstance(keys, Key)
def test_get_key_w_object_info(self):
self.er.add_ref('uuid1',
key='key1',
resource_name='resource1',
resource_uri='resource_uri1',
entity_id="id11",
entity_uri='url11')
self.er.add_ref('uuid2',
key='key1',
resource_name='resource2',
resource_uri='resource_uri2',
entity_id="id12",
entity_uri='url21')
keys = self.er.get_key('key1', 'uuid1', '')
self.assertIsInstance(keys, Key)
self.assertEqual(keys.key, 'key1')
def test_get_key_w_bad_object_info(self):
self.er.add_ref('uuid1',
key='key1',
resource_name='resource1',
resource_uri='resource_uri1',
entity_id="id11",
entity_uri='url11')
self.er.add_ref('uuid2',
key='key1',
resource_name='resource2',
resource_uri='resource_uri2',
entity_id="id12",
entity_uri='url21')
with self.assertRaisesRegex(ValueError, "No key 'key2'"):
self.er.get_key('key2', 'uuid1', '')
def test_get_key_doesnt_exist(self):
self.er.add_ref('uuid1',
key='key1',
resource_name='resource1',
resource_uri='resource_uri1',
entity_id="id11",
entity_uri='url11')
self.er.add_ref('uuid2',
key='key1',
resource_name='resource2',
resource_uri='resource_uri2',
entity_id="id12",
entity_uri='url21')
with self.assertRaisesRegex(ValueError,
"key 'bad_key' does not exist"):
self.er.get_key('bad_key')
@unittest.skip('Outdated do to privatization')
def test_get_key_same_keyname_all(self):
self.er = ExternalResources('terms')
key1 = self.er._add_key('key1')
key2 = self.er._add_key('key1')
self.er.add_ref('uuid1',
key=key1,
resource_name='resource1',
resource_uri='resource_uri1',
entity_id="id11",
entity_uri='url11')
self.er.add_ref('uuid2',
key=key2,
resource_name='resource2',
resource_uri='resource_uri2',
entity_id="id12",
entity_uri='url12')
self.er.add_ref('uuid1',
key=self.er.get_key('key1', 'uuid1', ''),
resource_name='resource3',
resource_uri='resource_uri3',
entity_id="id13",
entity_uri='url13')
keys = self.er.get_key('key1')
self.assertIsInstance(keys, Key)
self.assertEqual(keys[0].key, 'key1')
self.assertEqual(keys[1].key, 'key1')
def test_get_key_same_keyname_specific(self):
self.er = ExternalResources('terms')
self.er.add_ref('uuid1',
key='key1',
resource_name='resource1',
resource_uri='resource_uri1',
entity_id="id11",
entity_uri='url11')
self.er.add_ref('uuid2',
key='key2',
resource_name='resource2',
resource_uri='resource_uri2',
entity_id="id12",
entity_uri='url12')
self.er.add_ref('uuid1',
key=self.er.get_key('key1', 'uuid1', ''),
resource_name='resource3',
resource_uri='resource_uri3',
entity_id="id13",
entity_uri='url13')
keys = self.er.get_key('key1', 'uuid1', '')
self.assertIsInstance(keys, Key)
self.assertEqual(keys.key, 'key1')
self.assertEqual(self.er.keys.data, [('key1', ), ('key2', )])