def plot(self):
self.configure()
if not utils.does_figure_object_exists(self.figure):
self.create_figure()
self.create_axis()
data = self.data_function()
if self.auto_contrast is True:
self.optimize_contrast(data)
if (not self.axes_manager or self.axes_manager.navigation_size == 0):
self.plot_indices = False
if self.plot_indices is True:
self._text = self.ax.text(*self._text_position,
s=str(self.axes_manager.indices),
transform=self.ax.transAxes,
fontsize=12,
color='red',
animated=True)
self.update()
if self.plot_scalebar is True:
if self.pixel_units is not None:
self.ax.scalebar = widgets.Scale_Bar(
ax=self.ax,
units=self.pixel_units,
)
if self.plot_colorbar is True:
self._colorbar = plt.colorbar(self.ax.images[0], ax=self.ax)
self._colorbar.ax.yaxis.set_animated(True)
self.figure.canvas.draw()
if hasattr(self.figure, 'tight_layout'):
self.figure.tight_layout()
self.connect()
def plot(self):
self.configure()
if not utils.does_figure_object_exists(self.figure):
self.create_figure()
self.create_axis()
data = self.data_function()
if self.auto_contrast is True:
self.optimize_contrast(data)
if (not self.axes_manager or
self.axes_manager.navigation_size==0):
self.plot_indices = False
if self.plot_indices is True:
self._text = self.ax.text(*self._text_position,
s=str(self.axes_manager.indices[::-1]),
transform = self.ax.transAxes,
fontsize=12,
color='red')
self.update_image()
if self.plot_scalebar is True:
if self.pixel_units is not None:
self.ax.scalebar = widgets.Scale_Bar(
ax=self.ax,
units=self.pixel_units,)
if self.plot_colorbar is True:
fig = self.ax.figure
self._colorbar = plt.colorbar(self.ax.images[0], ax=self.ax)
self.figure.canvas.draw()
if hasattr(self.figure, 'tight_layout'):
self.figure.tight_layout()
self.connect()
def set_on(self, value):
if value is not self.is_on():
if value is True:
self.add_patch_to(self.ax)
self.connect(self.ax)
elif value is False:
for container in [
self.ax.patches, self.ax.lines, self.ax.artists,
self.ax.texts
]:
if self.patch in container:
container.remove(self.patch)
self.disconnect(self.ax)
self.__is_on = value
if does_figure_object_exists(self.ax.figure):
self.ax.figure.canvas.draw()
else:
self.ax = None
def plot(self):
if self.signal._plot is None or not \
does_figure_object_exists(self.signal._plot.signal_plot.figure):
self.signal.plot()
hse = self.signal._plot
l1 = hse.signal_plot.ax_lines[0]
self.original_color = l1.line.get_color()
l1.set_line_properties(color=self.original_color, type='scatter')
l2 = drawing.spectrum.SpectrumLine()
l2.data_function = self.model2plot
l2.set_line_properties(color=np.array(self.line_color.Get()) / 255.,
type='line')
# Add the line to the figure
hse.signal_plot.add_line(l2)
l2.plot()
self.data_line = l1
self.smooth_line = l2
self.smooth_diff_line = None
def set_on(self, value):
if value is not self.is_on():
if value is True:
self.add_patch_to(self.ax)
self.connect(self.ax)
elif value is False:
for container in [
self.ax.patches,
self.ax.lines,
self.ax.artists,
self.ax.texts]:
if self.patch in container:
container.remove(self.patch)
self.disconnect(self.ax)
self.__is_on = value
if does_figure_object_exists(self.ax.figure):
self.ax.figure.canvas.draw()
else:
self.ax = None
def plot(self):
if self.signal._plot is None or not \
does_figure_object_exists(self.signal._plot.spectrum_plot.figure):
self.signal.plot()
hse = self.signal._plot
l1 = hse.spectrum_plot.ax_lines[0]
self.original_color = l1.line.get_color()
l1.line_properties_helper(self.original_color, 'scatter')
l1.set_properties()
l2 = drawing.spectrum.SpectrumLine()
l2.data_function = self.model2plot
l2.line_properties_helper(np.array(
self.line_color.Get())/255., 'line')
# Add the line to the figure
hse.spectrum_plot.add_line(l2)
l2.plot()
self.data_line = l1
self.smooth_line = l2
self.smooth_diff_line = None
def plot(self):
if not utils.does_figure_object_exists(self.figure):
self.create_figure()
self.create_axis()
data = self.data_function()
if self.auto_contrast is True:
self.optimize_contrast(data)
self.update_image()
if self.plot_scale_bar is True:
if self.pixel_size is not None:
self.ax.scale_bar = widgets.Scale_Bar(
ax = self.ax, units = self.pixel_units,
pixel_size = self.pixel_size)
# Adjust the size of the window
#size = [ 6, 6.* data.shape[0] / data.shape[1]]
#self.figure.set_size_inches(size, forward = True)
self.figure.canvas.draw()
if hasattr(self.figure, 'tight_layout'):
self.figure.tight_layout()
self.connect()
def close(self):
if utils.does_figure_object_exists(self.figure) is True:
plt.close(self.figure)
def close(self):
for line in self.ax_lines + self.right_ax_lines:
line.close()
if utils.does_figure_object_exists(self.figure):
plt.close(self.figure)
def close(self):
self.disconnect()
if utils.does_figure_object_exists(self.figure) is True:
plt.close(self.figure)
def close(self):
self.disconnect()
if utils.does_figure_object_exists(self.figure) is True:
plt.close(self.figure)
def is_active(self):
return utils.does_figure_object_exists(self.signal_plot.figure)
def close(self):
for line in self.ax_lines + self.right_ax_lines:
line.close()
if utils.does_figure_object_exists(self.figure):
plt.close(self.figure)
