from pathlib import Path import pkg_resources from libsbml_draw.model.sbml_layout import SBMLlayout model_file_name = "model.xml" model_file = Path(pkg_resources.resource_filename( "libsbml_draw", "model/data/" + model_file_name)) sl = SBMLlayout(str(model_file)) fr_alg = sl.getLayoutAlgorithmOptions() def test_fr_alg_options_defaults(): assert fr_alg.k == 20 assert fr_alg.gravity == 0 assert fr_alg.baryx == 500 assert fr_alg.baryy == 500 assert fr_alg.autobary == 1 assert fr_alg.padding == 20 sl2 = SBMLlayout(str(model_file)) sl2.setLayoutAlgorithm_k(15) sl2.setLayoutAlgorithm_gravity(20) sl2.setLayoutAlgorithm_baryx(100)
model_file_name = "glycolysis_BIOMD176.xml" model_file = Path( pkg_resources.resource_filename("libsbml_draw", "model/data/" + model_file_name)) sl = SBMLlayout(str(model_file)) sl._describeModel() sl.drawNetwork() sl.aliasNode("ATP") sl.aliasNode("ADP") sl.drawNetwork() sl.regenerateLayout() sl.drawNetwork() loo = sl.getLayoutAlgorithmOptions() print(loo.k) #sl.setLayoutAlgorithm_grav() #sl.drawNetwork("glycolysis_bm12.png") #sl.drawNetwork("glycolysis_bm12.pdf")