def main(matrix, genomes):
transpose_matrix(matrix)
names = []
for line in open(genomes, "rU"):
newline = line.strip()
fields = newline.split()
names.append(fields)
reorder_matrix("tmp.matrix", names)
os.system("rm tmp.matrix")
def main(matrix, genomes):
transpose_matrix(matrix)
reorder_matrix("tmp.matrix", genomes)
def main(matrix, tree):
transpose_matrix(matrix)
names = parse_tree(tree)
reorder_matrix("tmp.matrix", names)
os.system("rm tmp.matrix")
