def get_mendeley_session():
mendeley_client = mendeley_lib.Mendeley(
client_id=os.getenv("MENDELEY_OAUTH2_CLIENT_ID"),
client_secret=os.getenv("MENDELEY_OAUTH2_SECRET"))
auth = mendeley_client.start_client_credentials_flow()
session = auth.authenticate()
return session
def _get_client(self, credentials):
if not self._client:
partial = mendeley.Mendeley(
client_id=self.client_id,
client_secret=self.client_secret,
redirect_uri=web_url_for('oauth_callback',
service_name='mendeley',
_absolute=True),
)
self._client = APISession(partial, credentials)
return self._client
def setUp(self):
super(MendeleyApiTestCase, self).setUp()
self.provider = model.Mendeley()
self.mock_partial = mendeley.Mendeley(
client_id='1234567890',
client_secret='1a2s3d4f5g',
redirect_uri='/api/v1/some/fake/url/mendeley'
)
self.mock_credentials = {
'access_token': '1234567890987654321',
'refresh_token': 'asdfghjklkjhgfdsa',
'expires_at': time.mktime((datetime.datetime.utcnow() + datetime.timedelta(days=10)).timetuple()),
'token_type': 'bearer',
}
def _get_client(self, credentials=None):
partial = mendeley.Mendeley(
client_id=self.client_id,
client_secret=self.client_secret,
redirect_uri=web_url_for(
'oauth_callback', service_name='mendeley', _absolute=True)
if has_app_context() else None,
)
credentials = credentials or {
'access_token': self.account.oauth_key,
'refresh_token': self.account.refresh_token,
'expires_at': time.mktime(self.account.expires_at.timetuple()),
'token_type': 'bearer',
}
return APISession(partial, credentials)
def main(*, papers_details_path: str) -> Tuple[str, ...]:
papers_details = pandas.read_csv(papers_details_path, index_col=0)
papers_details['mendeley keywords'] = None
papers_details['publication ids'] = None
papers_details['mendeley keywords'] = papers_details[
'mendeley keywords'].astype('object')
papers_details['publication ids'] = papers_details[
'publication ids'].astype('object')
mendeley_client = mendeley.Mendeley("10572",
client_secret="egcetJherqDH0tJ5")
auth = mendeley_client.start_client_credentials_flow()
session = auth.authenticate()
progress_bar = tqdm.tqdm(papers_details.iterrows(),
desc='getting details from Mendeley',
unit='paper',
total=len(papers_details.index))
for index, paper in progress_bar:
doi = paper["doi"]
if doi != '':
try:
mendeley_paper = session.catalog.by_identifier(doi=doi)
except mendeley.exception.MendeleyException:
mendeley_paper = get_similar_paper(paper, session)
else:
mendeley_paper = get_similar_paper(paper, session)
if mendeley_paper is not None:
papers_details.loc[index, 'mendeley id'] = mendeley_paper.id
papers_details.at[index, 'mendeley keywords'] = tuple(
mendeley_paper.keywords
) if mendeley_paper.keywords is not None else tuple()
papers_details.at[index, 'publication ids'] = tuple(
mendeley_paper.identifiers.items(
)) if mendeley_paper.identifiers is not None else None
papers_details_mendeley_path = os.path.join('phase1_2', 'generated',
'papers_details.mendeley.csv')
papers_details.drop_duplicates().to_csv(papers_details_mendeley_path)
return papers_details_mendeley_path,
def _connect(self):
mendeley = mendeley_lib.Mendeley(
client_id=os.getenv("MENDELEY_OAUTH2_CLIENT_ID"),
client_secret=os.getenv("MENDELEY_OAUTH2_SECRET"))
session = mendeley.start_client_credentials_flow().authenticate()
return session