Python parse_allele_name示例

示例#1

文件： test_mhc_allele_names.py 项目： bulik/mhctools

def test_mouse_class1_alleles_H2_Db():
    # H2-Db
    eq_(parse_allele_name("H2-Db"),
        AlleleName("H-2", "D", "", "b"))
    eq_(normalize_allele_name("H2-Db"), "H-2-Db")
    eq_(compact_allele_name("H2-Db"), "Db")

    # with hyphen in "H-2"
    eq_(parse_allele_name("H-2-Db"),
        AlleleName("H-2", "D", "", "b"))
    eq_(normalize_allele_name("H-2-Db"), "H-2-Db")
    eq_(compact_allele_name("H-2-Db"), "Db")

示例#2

文件： test_mhc_allele_names.py 项目： bulik/mhctools

def test_mouse_class1_alleles_H2_Kk():
    # H2-Kk
    eq_(parse_allele_name("H2-Kk"),
        AlleleName("H-2", "K", "", "k"))
    eq_(normalize_allele_name("H2-Kk"), "H-2-Kk")
    eq_(compact_allele_name("H-2-Kk"), "Kk")

    # with a hyphen in "H-2"
    eq_(parse_allele_name("H-2-Kk"),
        AlleleName("H-2", "K", "", "k"))
    eq_(normalize_allele_name("H-2-Kk"), "H-2-Kk")
    eq_(compact_allele_name("H-2-Kk"), "Kk")

示例#3

文件： test_mhc_allele_names.py 项目： bulik/mhctools

def test_mouse_class2_alleles():
    # H2-IAb
    eq_(parse_allele_name("H2-IAb"),
        AlleleName("H-2", "IA", "", "b"))
    eq_(normalize_allele_name("H2-IAb"), "H-2-IAb")
    eq_(compact_allele_name("H2-IAb"), "IAb")

    # with hyphen in "H-2"
    eq_(parse_allele_name("H-2-IAb"),
        AlleleName("H-2", "IA", "", "b"))
    eq_(normalize_allele_name("H-2-IAb"), "H-2-IAb")
    eq_(compact_allele_name("H-2-IAb"), "IAb")

示例#4

文件： test_mhc_allele_names.py 项目： bulik/mhctools

def test_sheep_class2_allele():
    eq_(parse_allele_name("Ovar-DRB1*0804"),
        AlleleName("Ovar", "DRB1", "08", "04"))

示例#5

文件： test_mhc_allele_names.py 项目： bulik/mhctools

def test_sheep_class1_allele():
    eq_(parse_allele_name("Ovar-N*50001"),
        AlleleName("Ovar", "N", "500", "01"))

示例#6

文件： test_mhc_allele_names.py 项目： bulik/mhctools

def test_dog_class2_allele():
    eq_(parse_allele_name("DLA-DQA1*00101"),
        AlleleName("DLA", "DQA1", "01", "01"))