def build_plot(self, usePCA):
import pylab
self.normaliser = MorphologyForRenderingOperator(self.morph, usePCA=usePCA)
# Find the Point that is the furthest distance way from
# the centre when the cell is centred and rotated:
rotator = lambda s: self.normaliser(s.get_distal_npa3())
rotated_section_dict = DictBuilderSectionVisitorHomo(morph=self.morph, functor=rotator)()
# Add in the parents manually:
dummy_scetion = self.morph._dummysection
rotated_section_dict[dummy_scetion] = self.normaliser(dummy_scetion.get_distal_npa3())
max_axis = max([numpy.linalg.norm(rotated_section_pt) for rotated_section_pt in rotated_section_dict.values()])
plot_lims = (max_axis * -1.1, max_axis * 1.1)
max_x = max([numpy.fabs(rotated_section_pt[0]) for rotated_section_pt in rotated_section_dict.values()])
max_y = max([numpy.fabs(rotated_section_pt[1]) for rotated_section_pt in rotated_section_dict.values()])
max_z = max([numpy.fabs(rotated_section_pt[2]) for rotated_section_pt in rotated_section_dict.values()])
maxes = [max_x, max_y, max_z]
# allMax = max(maxes)
for i in self.plot_views:
maxes[i] = maxes[i] + 0.2 * max([max_x, max_y, max_z])
self.fig = pylab.figure(**self.fig_kwargs) # figsize=(7, 7))
self.fig.subplots_adjust(left=0.05, top=0.95, right=0.95, bottom=0.05, wspace=0.15, hspace=0.15)
self.subplots = {}
for i in self.plot_views:
self.subplots[i] = self.build_draw_sub_plot(rotated_section_dict, self.fig, i, plot_lims)
def buildPlot(self, usePCA):
import pylab
self.normaliser = MorphologyForRenderingOperator(self.morph, usePCA=usePCA)
# Find the Point that is the furthest distance way from
# the centre when the cell is centred and rotated:
rotator = lambda s: self.normaliser(s.getDistalNPA3())
rotatedSectionDict = DictBuilderSectionVisitorHomo(morph=self.morph, functor=rotator ) ()
# Add in the parents manually:
p = self.morph._dummysection
rotatedSectionDict[ p ] = self.normaliser( p.getDistalNPA3() )
maxAxis = max([ numpy.linalg.norm(rs) for rs in rotatedSectionDict.values() ])
plotLims = (maxAxis * -1.1, maxAxis * 1.1)
maxX = max([ numpy.fabs(rs[0]) for rs in rotatedSectionDict.values() ])
maxY = max([ numpy.fabs(rs[1]) for rs in rotatedSectionDict.values() ])
maxZ = max([ numpy.fabs(rs[2]) for rs in rotatedSectionDict.values() ])
maxes = [maxX, maxY, maxZ]
#allMax = max(maxes)
for i in self.plotViews:
maxes[i] = maxes[i] + 0.2 * max([maxX, maxY, maxZ])
self.fig = pylab.figure(figsize=(7, 7))
self.fig.subplots_adjust(left=0.05, top=0.95, right=0.95, bottom=0.05, wspace=0.1, hspace=0.1)
self.subplots = {}
for i in self.plotViews:
self.subplots[i] = self.buildDrawSubPlot(rotatedSectionDict, self.fig, i, plotLims)
def build_plot(self, usePCA):
import pylab
self.normaliser = MorphologyForRenderingOperator(self.morph,
usePCA=usePCA)
# Find the Point that is the furthest distance way from
# the centre when the cell is centred and rotated:
rotator = lambda s: self.normaliser(s.get_distal_npa3())
rotated_section_dict = DictBuilderSectionVisitorHomo(morph=self.morph,
functor=rotator)()
# Add in the parents manually:
dummy_scetion = self.morph._dummysection
rotated_section_dict[dummy_scetion] = self.normaliser(
dummy_scetion.get_distal_npa3())
max_axis = max([
numpy.linalg.norm(rotated_section_pt)
for rotated_section_pt in rotated_section_dict.values()
])
plot_lims = (max_axis * -1.1, max_axis * 1.1)
max_x = max([
numpy.fabs(rotated_section_pt[0])
for rotated_section_pt in rotated_section_dict.values()
])
max_y = max([
numpy.fabs(rotated_section_pt[1])
for rotated_section_pt in rotated_section_dict.values()
])
max_z = max([
numpy.fabs(rotated_section_pt[2])
for rotated_section_pt in rotated_section_dict.values()
])
maxes = [max_x, max_y, max_z]
# allMax = max(maxes)
for i in self.plot_views:
maxes[i] = maxes[i] + 0.2 * max([max_x, max_y, max_z])
self.fig = pylab.figure(**self.fig_kwargs) #figsize=(7, 7))
self.fig.subplots_adjust(
left=0.05,
top=0.95,
right=0.95,
bottom=0.05,
wspace=0.15,
hspace=0.15,
)
self.subplots = {}
for i in self.plot_views:
self.subplots[i] = self.build_draw_sub_plot(
rotated_section_dict, self.fig, i, plot_lims)
