def test_ProcStreamlines_outputs():
output_map = dict(proc=dict(),
)
outputs = ProcStreamlines.output_spec()
for key, metadata in output_map.items():
for metakey, value in metadata.items():
yield assert_equal, getattr(outputs.traits()[key], metakey), value
def test_ProcStreamlines_outputs():
output_map = dict(
outputroot_files=dict(),
proc=dict(),
)
outputs = ProcStreamlines.output_spec()
for key, metadata in output_map.items():
for metakey, value in metadata.items():
yield assert_equal, getattr(outputs.traits()[key], metakey), value
def test_ProcStreamlines_inputs():
input_map = dict(allowmultitargets=dict(argstr='-allowmultitargets',
),
args=dict(argstr='%s',
),
datadims=dict(argstr='-datadims %s',
units='voxels',
),
directional=dict(argstr='-directional %s',
units='NA',
),
discardloops=dict(argstr='-discardloops',
),
endpointfile=dict(argstr='-endpointfile %s',
),
environ=dict(nohash=True,
usedefault=True,
),
exclusionfile=dict(argstr='-exclusionfile %s',
),
gzip=dict(argstr='-gzip',
),
ignore_exception=dict(nohash=True,
usedefault=True,
),
in_file=dict(argstr='-inputfile %s',
mandatory=True,
position=1,
),
inputmodel=dict(argstr='-inputmodel %s',
usedefault=True,
),
iterations=dict(argstr='-iterations %d',
units='NA',
),
maxtractlength=dict(argstr='-maxtractlength %d',
units='mm',
),
maxtractpoints=dict(argstr='-maxtractpoints %d',
units='NA',
),
mintractlength=dict(argstr='-mintractlength %d',
units='mm',
),
mintractpoints=dict(argstr='-mintractpoints %d',
units='NA',
),
noresample=dict(argstr='-noresample',
),
out_file=dict(argstr='> %s',
genfile=True,
position=-1,
),
outputacm=dict(argstr='-outputacm',
requires=['outputroot', 'seedfile'],
),
outputcbs=dict(argstr='-outputcbs',
requires=['outputroot', 'targetfile', 'seedfile'],
),
outputcp=dict(argstr='-outputcp',
requires=['outputroot', 'seedfile'],
),
outputroot=dict(argstr='-outputroot %s',
),
outputsc=dict(argstr='-outputsc',
requires=['outputroot', 'seedfile'],
),
outputtracts=dict(argstr='-outputtracts',
),
regionindex=dict(argstr='-regionindex %d',
units='mm',
),
resamplestepsize=dict(argstr='-resamplestepsize %d',
units='NA',
),
seedfile=dict(argstr='-seedfile %s',
),
seedpointmm=dict(argstr='-seedpointmm %s',
units='mm',
),
seedpointvox=dict(argstr='-seedpointvox %s',
units='voxels',
),
targetfile=dict(argstr='-targetfile %s',
),
terminal_output=dict(mandatory=True,
nohash=True,
),
truncateinexclusion=dict(argstr='-truncateinexclusion',
),
truncateloops=dict(argstr='-truncateloops',
),
voxeldims=dict(argstr='-voxeldims %s',
units='mm',
),
waypointfile=dict(argstr='-waypointfile %s',
),
)
inputs = ProcStreamlines.input_spec()
for key, metadata in input_map.items():
for metakey, value in metadata.items():
yield assert_equal, getattr(inputs.traits()[key], metakey), value
def test_ProcStreamlines_inputs():
input_map = dict(
allowmultitargets=dict(argstr='-allowmultitargets', ),
args=dict(argstr='%s', ),
datadims=dict(
argstr='-datadims %s',
units='voxels',
),
directional=dict(
argstr='-directional %s',
units='NA',
),
discardloops=dict(argstr='-discardloops', ),
endpointfile=dict(argstr='-endpointfile %s', ),
environ=dict(
nohash=True,
usedefault=True,
),
exclusionfile=dict(argstr='-exclusionfile %s', ),
gzip=dict(argstr='-gzip', ),
ignore_exception=dict(
nohash=True,
usedefault=True,
),
in_file=dict(
argstr='-inputfile %s',
mandatory=True,
position=1,
),
inputmodel=dict(
argstr='-inputmodel %s',
usedefault=True,
),
iterations=dict(
argstr='-iterations %d',
units='NA',
),
maxtractlength=dict(
argstr='-maxtractlength %d',
units='mm',
),
maxtractpoints=dict(
argstr='-maxtractpoints %d',
units='NA',
),
mintractlength=dict(
argstr='-mintractlength %d',
units='mm',
),
mintractpoints=dict(
argstr='-mintractpoints %d',
units='NA',
),
noresample=dict(argstr='-noresample', ),
out_file=dict(
argstr='> %s',
genfile=True,
position=-1,
),
outputacm=dict(
argstr='-outputacm',
requires=['outputroot', 'seedfile'],
),
outputcbs=dict(
argstr='-outputcbs',
requires=['outputroot', 'targetfile', 'seedfile'],
),
outputcp=dict(
argstr='-outputcp',
requires=['outputroot', 'seedfile'],
),
outputroot=dict(argstr='-outputroot %s', ),
outputsc=dict(
argstr='-outputsc',
requires=['outputroot', 'seedfile'],
),
outputtracts=dict(argstr='-outputtracts', ),
regionindex=dict(
argstr='-regionindex %d',
units='mm',
),
resamplestepsize=dict(
argstr='-resamplestepsize %d',
units='NA',
),
seedfile=dict(argstr='-seedfile %s', ),
seedpointmm=dict(
argstr='-seedpointmm %s',
units='mm',
),
seedpointvox=dict(
argstr='-seedpointvox %s',
units='voxels',
),
targetfile=dict(argstr='-targetfile %s', ),
terminal_output=dict(nohash=True, ),
truncateinexclusion=dict(argstr='-truncateinexclusion', ),
truncateloops=dict(argstr='-truncateloops', ),
voxeldims=dict(
argstr='-voxeldims %s',
units='mm',
),
waypointfile=dict(argstr='-waypointfile %s', ),
)
inputs = ProcStreamlines.input_spec()
for key, metadata in input_map.items():
for metakey, value in metadata.items():
yield assert_equal, getattr(inputs.traits()[key], metakey), value
