y_axon_tp_rand = 30 y_soma_tp_rand_norm = 30 y_axon_tp_rand_norm = 26 #Just add types as you go TEST_TYPE = 21 #Catalog #Square wave distance finder if TEST_TYPE == 1: y0 = 90 mydur = .3 stim_params = [mydelay, mydur, mysimtime, mydt, myrho] baseline_thr = ptl.get_thresh(cell, 'sq', init_amp, init_step, x_soma, y0, stim_params) print 'baseline:',baseline_thr for dely in range(0,50,2): y_new = y0 - dely print 'y:',y_new thr = ptl.get_thresh(cell, 'sq', init_amp, init_step, x_axon, y_new, stim_params) print thr #Triphasic wave distance finder if TEST_TYPE == 2: y0 = 30 mydur = .3 stim_params = [mydelay, mydur, mysimtime, mydt, myrho] baseline_thr = ptl.get_thresh(cell, 'sq', init_amp, init_step, x_soma, y0, stim_params) print 'baseline:',baseline_thr for dely in range(0,y0,2):
#plt.figure()
#plt.plot(t,i)
#plt.show()
#make 3d square wave plot duration vs. distance
if TEST_TYPE == 2:
cntlim = 30
durlist = [np.round(i,1) for i in np.linspace(.1,3,20)]
distlist = np.linspace(1,400,30)
outsoma = np.zeros((len(durlist),len(distlist)))
for durind, dur in enumerate(durlist):
stim_params = [mydelay, dur, mysimtime, mydt, myrho]
for distind, dist in enumerate(distlist):
print 'dur:',dur,'dist:',dist
thr = ptl.get_thresh(cell, 'sq', init_amp, init_step, dist, y, stim_params, cnt_lim = cntlim)
print thr
outsoma[durind, distind] = thr
fig, ax = plt.subplots()
im = ax.imshow(outsoma, cmap=plt.cm.RdBu, vmin=0, vmax=8, extent=[min(distlist), max(distlist), min(durlist), max(durlist)], aspect = 'auto')
im.set_interpolation('none')
cb = fig.colorbar(im, ax=ax)
plt.xlabel('Electrode Distance along cell [microns]')
plt.ylabel('Pulse duration [ms]')
plt.title('Threshold vs. Square Pulse Location and Duration (Soma)')
plt.show()
save_obj(outsoma, 'outsoma.p')
#make 3d DPP Balanced plot prepulse duration vs. distance
x_soma = 15
x_ah = 50
x_ais = 120
x_axon = 500
x_list = [x_soma, x_ah, x_ais, x_axon]
x_list_label = ["Soma", "AIS", "Narrow Segment", "Distal Axon"]
y_list = [5, 10, 20, 40, 60, 100] # microns
durange = np.linspace(0.01, 10, 20)
for y in y_list:
data = np.zeros((len(x_list), len(durange)))
for ix, x in enumerate(x_list):
for imydur, mydur in enumerate(durange):
print "y=", y, x, mydur
stim_params = [mydelay, mydur, mysimtime, mydt, myrho]
thr = ptl.get_thresh(cell, "sq", init_amp, init_step, x, y, stim_params, cnt_lim=30)
print thr
data[ix, imydur] = thr
# plot
plt.figure()
hlist = []
# for ii,i in enumerate(np.transpose(data)):
for ii, i in enumerate(data):
grot = plt.plot(durange, i, label=x_list_label[ii])
hlist.append(grot)
legend(hlist)
plt.title("Strength Duration Curves at " + str(y) + " microns")
plt.xlabel("Time [ms]")
plt.ylabel("Threshold [uA]")
