def call_transcript_prediction_stringtie(args_list): """ wrapper for submitting jobs to pygrid """ from rnaseq_align_assembly import transcript_assembly as tsa mmr_read_dir, organism_name, trans_pred_out_dir = args_list tsa.run_stringtie(organism_name, mmr_read_dir, trans_pred_out_dir) return "done"
def call_transcript_prediction_stringtie(args_list): """ wrapper for submitting jobs to pygrid """ from rnaseq_align_assembly import transcript_assembly as tsa mmr_read_dir, organism_name, trans_pred_out_dir = args_list mmr_read_file = "%s/%s_Aligned_mmr_sortbyCoord.bam" % (mmr_read_dir, organism_name) os.chdir(trans_pred_out_dir) tsa.run_stringtie(mmr_read_file) return "done"