def test_searches_parsers_params_parser_chain_filters(dummy_request): from snovault.elasticsearch.searches.parsers import ParamsParser dummy_request.environ['QUERY_STRING'] = ( 'type!=Experiment&type=File&files.file_type=fastq&field!=status') p = ParamsParser(dummy_request) assert p.get_type_filters(params=p.get_must_not_match_filters()) == [ ('type!', 'Experiment') ] assert p.get_must_not_match_filters(params=p.get_type_filters()) == [ ('type!', 'Experiment') ]
def test_searches_parsers_params_parser_get_type_filters(dummy_request): from snovault.elasticsearch.searches.parsers import ParamsParser dummy_request.environ['QUERY_STRING'] = ( 'type=Experiment&type=File&field=status&type!=Item') p = ParamsParser(dummy_request) assert p.get_type_filters() == [('type', 'Experiment'), ('type', 'File'), ('type!', 'Item')]
def test_searches_parsers_params_parser_filter_and_query_string(dummy_request): from snovault.elasticsearch.searches.parsers import ParamsParser dummy_request.environ['QUERY_STRING'] = ( 'type=File&file_format%21=bigWig&file_type%21=bigBed+tss_peak' '&file_format_type=bed3%2B') p = ParamsParser(dummy_request) assert p.get_type_filters() == [('type', 'File')] assert p.get_query_string(params=p.get_type_filters()) == 'type=File' assert p.get_must_not_match_filters() == [('file_format!', 'bigWig'), ('file_type!', 'bigBed tss_peak') ] assert p.get_query_string(params=p.get_must_not_match_filters( )) == 'file_format%21=bigWig&file_type%21=bigBed+tss_peak' assert p.get_must_match_filters() == [('type', 'File'), ('file_format_type', 'bed3+')] assert p.get_query_string(params=p.get_must_match_filters() ) == 'type=File&file_format_type=bed3%2B' assert dummy_request.environ['QUERY_STRING'] == p.get_query_string()
def test_searches_parsers_params_parser_filtered_is_param(dummy_request): from snovault.elasticsearch.searches.parsers import ParamsParser dummy_request.environ['QUERY_STRING'] = ( 'type=File&status=released&file_type=bed+bed3%2B') p = ParamsParser(dummy_request) assert p.is_param('status', 'released') assert not p.is_param('status', 'released', params=p.get_type_filters()) assert p.is_param('file_type', 'bed bed3+', params=p.get_key_filters( key='file_type', params=p.get_must_match_filters()))
def test_searchers_parsers_params_parser_split_filters_by_must_and_exists( dummy_request): from snovault.elasticsearch.searches.defaults import NOT_FILTERS from snovault.elasticsearch.searches.parsers import ParamsParser dummy_request.environ['QUERY_STRING'] = ( 'type=*&status=released&status!=submitted&type=File&file_size=*' '&file_format%21=bigWig&restricted!=*&no_file_available!=*&limit=all') p = ParamsParser(dummy_request) must, must_not, exists, not_exists = p.split_filters_by_must_and_exists( params=p.get_not_keys_filters(not_keys=NOT_FILTERS) + p.get_type_filters()) assert must == [('status', 'released'), ('type', 'File')] assert must_not == [('status!', 'submitted'), ('file_format!', 'bigWig')] assert exists == [('file_size', '*'), ('type', '*')] assert not_exists == [('restricted!', '*'), ('no_file_available!', '*')]