def _calc_regularization_cost(self):
"""Calculate the regularization cost given the weight decay parameters.
Only the parameters will be considered that are stored in the set
self.regularize.
Returns
-------
theano variable
regularization cost depending on the parameters to be regularized
and the weight decay parameters for L1 and L2 regularization.
"""
cost = theano.shared(value=np.cast[floatX](.0))
l1_cost = 0
l2_cost = 0
for p in self.regularize:
l1_cost += T.sum(T.abs_(self.__dict__[p]))
l2_cost += T.sum(T.sqr(self.__dict__[p]))
l1_cost = debug_print(l1_cost, 'l1_cost')
l2_cost = debug_print(l2_cost, 'l2_cost')
if self.l1_weight != 0:
cost += self.l1_weight * l1_cost
if self.l2_weight != 0:
cost += self.l2_weight * l2_cost
return cost
def _elbo_t(logp, uw, inarray, n_mcsamples, random_seed):
"""Create Theano tensor of approximate ELBO by Monte Carlo sampling.
"""
l = (uw.size / 2).astype('int64')
u = uw[:l]
w = uw[l:]
# Callable tensor
logp_ = lambda input: theano.clone(logp, {inarray: input}, strict=False)
# Naive Monte-Carlo
r = MRG_RandomStreams(seed=random_seed)
if n_mcsamples == 1:
n = r.normal(size=inarray.tag.test_value.shape)
q = n * exp(w) + u
elbo = logp_(q) + tt.sum(w) + 0.5 * l * (1 + np.log(2.0 * np.pi))
else:
n = r.normal(size=(n_mcsamples, u.tag.test_value.shape[0]))
qs = n * exp(w) + u
logps, _ = theano.scan(fn=lambda q: logp_(q),
outputs_info=None,
sequences=[qs])
elbo = tt.mean(logps) + tt.sum(w) + 0.5 * l * (1 + np.log(2.0 * np.pi))
return elbo
def apply_rnnlm(self, sentence, sentence_mask, sentence_morph, sentence_morph_mask,
sentence_char, sentence_char_mask, use_noise=1):
src, src_mask = sentence[:-1], sentence_mask[:-1]
tgt, tgt_mask = sentence[1:], sentence_mask[1:]
src_morph, src_morph_mask = sentence_morph[:-1], sentence_morph_mask[:-1]
src_char, src_char_mask = sentence_char[:-1], sentence_char_mask[:-1]
emb_lstm_range = T.arange(self.n_emb_lstm)
#word lookup table
table = LookupTable(self.n_emb_lstm, self.vocab_size, name='Wemb')
src_emb = table.apply(src, emb_lstm_range)
self.layers.append(table)
if self.dropout < 1.0:
src_emb = DropoutLayer(src_emb, use_noise, self.dropout)
rnn_layer_1st = NormalRNN(self.n_emb_lstm, self.n_hids)
hiddens = rnn_layer_1st.apply(src_emb, src_mask)
self.layers.append(rnn_layer_1st)
logistic_layer = LogisticRegression(hiddens, self.n_hids, self.vocab_size)
self.layers.append(logistic_layer)
self.cost = logistic_layer.cost(tgt, tgt_mask)
for layer in self.layers:
self.params.extend(layer.params)
self.L2 = sum(T.sum(item ** 2) for item in self.params)
self.L1 = sum(T.sum(abs(item)) for item in self.params)
def _calc_regularization_cost(self):
"""Calculate the regularization cost given the weight decay parameters.
Only the parameters will be considered that are stored in the set
self.regularize. We need to handle it manually in this class, because
the weight matrices contain bias columns, which should not be considered
in regularization computation. Therefore, do not!!! add W1 and W2 to
self.regularize
Returns
-------
theano variable
regularization cost depending on the parameters to be regularized
and the weight decay parameters for L1 and L2 regularization.
"""
cost = super(SLmNce, self)._calc_regularization_cost()
l1_cost = T.sum(T.abs_(self.W1[:, :-1]))
l1_cost += T.sum(T.abs_(self.W2[:, :-1]))
l2_cost = T.sum(T.sqr(self.W1[:, :-1]))
l2_cost += T.sum(T.sqr(self.W2[:, :-1]))
if self.l1_weight != 0:
cost += self.l1_weight * l1_cost
if self.l2_weight != 0:
cost += self.l2_weight * l2_cost
return cost
def _compute_local_cn_acts(self, input, W):
# Without Scan (Faster than scan, but still way too slow)
shuffledIn = input.dimshuffle(0,1,'x')
shuffledMasks = self.localmask.dimshuffle('x',0,1)
# cubeIn = T.repeat(shuffledIn,self.localmask.shape[1],2)
# cubeMasks = T.repeat(shuffledMasks,input.shape[0],0)
maskedIn = shuffledIn * shuffledMasks
maskedInMean = T.sum(maskedIn,axis=1,keepdims=True) / T.sum(shuffledMasks,axis=1,keepdims=True)
maskedInVar = T.sum(T.sqr((maskedIn-maskedInMean)*shuffledMasks),axis=1,keepdims=True)/T.sum(shuffledMasks,axis=1,keepdims=True)
maskedInSTD = T.sqrt(maskedInVar)
maskedInSubMean = maskedIn - maskedInMean
maskedCN = maskedInSubMean / maskedInSTD
# maskedCN = maskedInSubMean
shuffledInCN = maskedCN.dimshuffle(2,0,1)
allOuts = T.dot(shuffledInCN, W)
diagMask = T.eye(self.localmask.shape[1],self.localmask.shape[1]).dimshuffle(0,'x',1)
diagMaskAll = allOuts * diagMask
activation = T.sum(diagMaskAll,axis=0)
return activation
def __init__(self, kernel, max_iter = 10, max_diff = None):
"""
:param kernel: a function with a signature (expected, observed) -> a similarity measure
that accepts symbolic theano expressions and returns them accordingly.
See `crayimage.hotornot.em.kernels` for examples.
:param max_iter: maximal number of iteration
:param max_diff: stop iterations if maximal difference in weights from the previous iteration is smaller than `max_diff`.
If None the check is not performed.
"""
self.original_shape = None
self.kernel = kernel
self.max_iter = max_iter
self.max_diff = max_diff
self.X = theano.shared(
np.zeros(shape=(0, 0), dtype='float32')
)
self.weights = theano.shared(
np.ones(shape=(0, ), dtype='float32')
)
canonical = T.sum(self.weights[:, None] * self.X, axis=0) / T.sum(self.weights)
weights_updates = self.kernel(canonical, self.X)
weights_diff = T.max(abs(weights_updates - self.weights))
upd = {
self.weights : weights_updates
}
self.iteration = theano.function([], weights_diff if max_diff is not None else [], updates=upd)
self.get_canonical = theano.function([], canonical)
def _build_conditional(self, Xnew, pred_noise, diag, X, Xu, y, sigma, cov_total, mean_total):
sigma2 = tt.square(sigma)
Kuu = cov_total(Xu)
Kuf = cov_total(Xu, X)
Luu = cholesky(stabilize(Kuu))
A = solve_lower(Luu, Kuf)
Qffd = tt.sum(A * A, 0)
if self.approx == "FITC":
Kffd = cov_total(X, diag=True)
Lamd = tt.clip(Kffd - Qffd, 0.0, np.inf) + sigma2
else: # VFE or DTC
Lamd = tt.ones_like(Qffd) * sigma2
A_l = A / Lamd
L_B = cholesky(tt.eye(Xu.shape[0]) + tt.dot(A_l, tt.transpose(A)))
r = y - mean_total(X)
r_l = r / Lamd
c = solve_lower(L_B, tt.dot(A, r_l))
Kus = self.cov_func(Xu, Xnew)
As = solve_lower(Luu, Kus)
mu = self.mean_func(Xnew) + tt.dot(tt.transpose(As), solve_upper(tt.transpose(L_B), c))
C = solve_lower(L_B, As)
if diag:
Kss = self.cov_func(Xnew, diag=True)
var = Kss - tt.sum(tt.square(As), 0) + tt.sum(tt.square(C), 0)
if pred_noise:
var += sigma2
return mu, var
else:
cov = (self.cov_func(Xnew) - tt.dot(tt.transpose(As), As) +
tt.dot(tt.transpose(C), C))
if pred_noise:
cov += sigma2 * tt.identity_like(cov)
return mu, stabilize(cov)
def _construct_mom_stuff(self):
"""
Construct the cost function for the moment-matching "regularizer".
"""
a = self.mom_mix_rate
dist_mean = self.GN.dist_mean
dist_cov = self.GN.dist_cov
# Get the generated sample observations for this batch, transformed
# linearly into the desired space for moment matching...
X_b = T.dot(self.GN.output, self.mom_match_proj)
# Get their mean
batch_mean = T.mean(X_b, axis=0)
# Get the updated generator distribution mean
new_mean = ((1.0 - a[0]) * self.GN.dist_mean) + (a[0] * batch_mean)
# Use the mean to get the updated generator distribution covariance
X_b_minus_mean = X_b - new_mean
# Whelp, I guess this line needs the cast... for some reason...
batch_cov = T.dot(X_b_minus_mean.T, X_b_minus_mean) / T.cast(X_b.shape[0], 'floatX')
new_cov = ((1.0 - a[0]) * self.GN.dist_cov) + (a[0] * batch_cov)
# Get the cost for deviation from the target distribution's moments
mean_err = new_mean - self.target_mean
cov_err = (new_cov - self.target_cov)
mm_cost = self.mom_match_weight[0] * \
(T.sum(mean_err**2.0) + T.sum(cov_err**2.0))
# Construct the updates for the running estimates of the generator
# distribution's first and second-order moments.
mom_updates = OrderedDict()
mom_updates[self.GN.dist_mean] = new_mean
mom_updates[self.GN.dist_cov] = new_cov
return [mm_cost, mom_updates]
def orthogonal_penalty(W, D, epsilon=1e-6, axis=1):
num = T.sqr(T.sum(W * D, axis=axis)) # n = (d^T w)^2
den = T.sum(T.sqr(W), axis=axis) * T.sum(T.sqr(D), axis=axis) # d = ||w||_2^2 * ||d||_2^2
cos = num / den # c = n / d
value = cos - (epsilon**2) # v = c - epsilon^2
hinge = value * (value > 0) # h = [ v ]_+
return T.sum(hinge)
def smooth_softmax(x):
"""Softmax that shouldn't overflow, with Laplacish smoothing."""
eps = 0.0001
e_x = T.exp(x - T.max(x, axis=1, keepdims=True))
p = (e_x / T.sum(e_x, axis=1, keepdims=True)) + constFX(eps)
p_sm = p / T.sum(p, axis=1, keepdims=True)
return p_sm
def test_pickle_unpickle_without_reoptimization():
mode = theano.config.mode
if mode in ["DEBUG_MODE", "DebugMode"]:
mode = "FAST_RUN"
x1 = T.fmatrix('x1')
x2 = T.fmatrix('x2')
x3 = theano.shared(numpy.ones((10, 10), dtype=floatX))
x4 = theano.shared(numpy.ones((10, 10), dtype=floatX))
y = T.sum(T.sum(T.sum(x1**2 + x2) + x3) + x4)
updates = OrderedDict()
updates[x3] = x3 + 1
updates[x4] = x4 + 1
f = theano.function([x1, x2], y, updates=updates, mode=mode)
# now pickle the compiled theano fn
string_pkl = pickle.dumps(f, -1)
# compute f value
in1 = numpy.ones((10, 10), dtype=floatX)
in2 = numpy.ones((10, 10), dtype=floatX)
# test unpickle without optimization
default = theano.config.reoptimize_unpickled_function
try:
# the default is True
theano.config.reoptimize_unpickled_function = False
f_ = pickle.loads(string_pkl)
assert f(in1, in2) == f_(in1, in2)
finally:
theano.config.reoptimize_unpickled_function = default
def eq_log_pstar_vgh(self, g_hat, h_hat, s1_hat, s0_hat, v):
"""
Computes the expectation (under the variational distribution q(g,h)=q(g)q(h)) of the
log un-normalized probability, i.e. log p^*(g,h,s,v)
:param g_hat: T.matrix of shape (batch_size, n_g)
:param h_hat: T.matrix of shape (batch_size, n_h)
:param v : T.matrix of shape (batch_size, n_v)
"""
from_v = self.from_v(v)
from_h = self.from_h(h_hat)
from_g = self.from_g(g_hat)
# center variables
cg_hat = g_hat - self.cg if self.flags['center_g'] else g_hat
ch_hat = h_hat - self.ch if self.flags['center_h'] else h_hat
# compute expectation of various s-quantities
s_hat = self.s_hat(ch_hat, s1_hat, s0_hat)
ss_hat = self.s_hat(ch_hat, s1_hat**2 + 1./self.alpha_prec,
s0_hat**2 + 1./self.alpha_prec)
lq = 0.
lq += T.sum(from_v * self._mu * from_h, axis=1)
lq += T.sum(from_v * s1_hat * from_h, axis=1)
lq -= 0.5 * T.sum(self.alpha_prec * ss_hat, axis=1)
lq -= T.sum(0.5 * self.lambd_prec * v**2, axis=1)
lq += T.sum(self.alpha_prec * from_g * s_hat, axis=1)
lq += T.dot(cg_hat, self.gbias)
lq += T.dot(ch_hat, self.hbias)
return T.mean(lq), [g_hat, h_hat, s_hat, ss_hat, s1_hat, s0_hat, v]
def dev_loss(self, dev_types, dev_lams, ss_ratio, y):
su_mask = ss_ratio * T.neq(y, 0).reshape((y.shape[0], 1))
un_mask = T.eq(y, 0).reshape((y.shape[0], 1))
ss_mask = su_mask + un_mask
var_fun = lambda x1, x2: T.sum(((x1 - x2) * ss_mask)**2.0) / T.sum(ss_mask)
tanh_fun = lambda x1, x2: var_fun(T.tanh(x1), T.tanh(x2))
norm_fun = lambda x1, x2: var_fun( \
(x1 / T.sqrt(T.sum(x1**2.0,axis=1,keepdims=1) + 1e-6)), \
(x2 / T.sqrt(T.sum(x2**2.0,axis=1,keepdims=1) + 1e-6)))
sigm_fun = lambda x1, x2: var_fun(T.nnet.sigmoid(x1), T.nnet.sigmoid(x2))
cent_fun = lambda xt, xo: T.sum(T.nnet.binary_crossentropy( \
T.nnet.sigmoid(xo), T.nnet.sigmoid(xt))) / xt.shape[0]
L = 0.0
for i in xrange(self.layer_count):
if (i < (self.layer_count - 1)):
x1 = self.layers[i].output
x2 = self.drop_nets[0][i].output
else:
x1 = self.layers[i].linear_output
x2 = self.drop_nets[0][i].linear_output
if (dev_types[i] == 1):
L = L + (dev_lams[i] * norm_fun(x1, x2))
elif (dev_types[i] == 2):
L = L + (dev_lams[i] * tanh_fun(x1, x2))
elif (dev_types[i] == 3):
L = L + (dev_lams[i] * sigm_fun(x1, x2))
elif (dev_types[i] == 4):
L = L + (dev_lams[i] * cent_fun(x1, x2))
else:
L = L + (dev_lams[i] * var_fun(x1, x2))
return L
def __init__(self,
word_vec_width,
batch_size,
num_hidden,
learning_rate=0.1):
self.num_hidden = num_hidden
self.learning_rate = learning_rate
self.word_vec_width = word_vec_width
self.batch_size = batch_size
self.vocab_mat = T.fmatrix('vocab')
self.word_onehot = T.fmatrix('word_onehot')
b = T.fvector('b')
W = T.fmatrix('W')
f = 1 / (1 + T.exp(-(W * (self.word_onehot.dot(self.vocab_mat) + b))))
s = T.sum(f)
self.exec_fn = theano.function(
[self.word_onehot, b, W, self.vocab_mat],
f,
allow_input_downcast=True)
self.word_onehot_c = T.fmatrix('word_onehot_c')
f_c = 1 / (1 + T.exp(-(W * (self.word_onehot_c.dot(self.vocab_mat)) + b)))
s_c = T.sum(f_c)
J = T.largest(0, 1 - s + s_c)
self.grad = theano.grad(J, [b, W, self.vocab_mat])
self.grad_fn = theano.function(
[self.word_onehot, self.word_onehot_c, b, W, self.vocab_mat],
self.grad,
allow_input_downcast=True)
def __init__(self, vocab_size, dim, lr=0.5):
W = np.asarray(np.random.rand(vocab_size, dim),
dtype=theano.config.floatX) / float(dim)
W1 = np.asarray((np.random.rand(vocab_size, dim)),
dtype=theano.config.floatX) / float(dim)
self.W = theano.shared(W, name='W', borrow=True)
self.W1 = theano.shared(W1, name='W1', borrow=True)
gW = np.asarray(np.ones((vocab_size, dim)), dtype=theano.config.floatX)
gW1 = np.asarray(
np.ones((vocab_size, dim)), dtype=theano.config.floatX)
self.gW = theano.shared(gW, name='gW', borrow=True)
self.gW1 = theano.shared(gW1, name='gW1', borrow=True)
X = T.vector()
fX = T.vector()
ind_W = T.ivector()
ind_W1 = T.ivector()
w = self.W[ind_W, :]
w1 = self.W1[ind_W1, :]
cost = T.sum(fX * ((T.sum(w * w1, axis=1) - X) ** 2))
grad = T.clip(T.grad(cost, [w, w1]), -5.0, 5.0)
updates1 = [(self.gW, T.inc_subtensor(self.gW[ind_W, :],
grad[0] ** 2))]
updates2 = [(self.gW1, T.inc_subtensor(self.gW1[ind_W1, :],
grad[1] ** 2))]
updates3 = [(self.W, T.inc_subtensor(self.W[ind_W, :],
- (lr / T.sqrt(self.gW[ind_W, :])) *
grad[0]))]
updates4 = [(self.W1, T.inc_subtensor(self.W1[ind_W1, :],
- (lr / T.sqrt(self.gW1[ind_W1, :])) *
grad[1]))]
updates = updates1 + updates2 + updates3 + updates4
self.cost_fn = theano.function(
inputs=[ind_W, ind_W1, X, fX], outputs=cost, updates=updates)
def unet_crossentropy_loss_sampled(y_true, y_pred):
print 'unet_crossentropy_loss_sampled'
epsilon = 1.0e-4
y_pred_clipped = T.flatten(T.clip(y_pred, epsilon, 1.0-epsilon))
y_true = T.flatten(y_true)
# this seems to work
# it is super ugly though and I am sure there is a better way to do it
# but I am struggling with theano to cooperate
# filter the right indices
indPos = T.nonzero(y_true)[0] # no idea why this is a tuple
indNeg = T.nonzero(1-y_true)[0]
# shuffle
n = indPos.shape[0]
indPos = indPos[srng.permutation(n=n)]
n = indNeg.shape[0]
indNeg = indNeg[srng.permutation(n=n)]
# take equal number of samples depending on which class has less
n_samples = T.cast(T.min([T.sum(y_true), T.sum(1-y_true)]), dtype='int64')
indPos = indPos[:n_samples]
indNeg = indNeg[:n_samples]
loss_vector = -T.mean(T.log(y_pred_clipped[indPos])) - T.mean(T.log(1-y_pred_clipped[indNeg]))
average_loss = T.mean(loss_vector)
print 'average_loss:', average_loss
return average_loss
def KLD_X(self,m,S):
N = m.shape[0]
Q = m.shape[1]
KL_X = T.sum(m*m)+T.sum(S-T.log(S)) - Q*N
return 0.5*KL_X
def __init__(self, incoming, b=lasagne.init.Constant(0.), g=lasagne.init.Constant(1.),
W=lasagne.init.Normal(0.05), train_g=False, init_stdv=1., nonlinearity=relu, **kwargs):
super(WeightNormLayer, self).__init__(incoming, **kwargs)
self.nonlinearity = nonlinearity
self.init_stdv = init_stdv
k = self.input_shape[1]
if b is not None:
self.b = self.add_param(b, (k,), name="b", regularizable=False)
if g is not None:
self.g = self.add_param(g, (k,), name="g", regularizable=False, trainable=train_g)
if len(self.input_shape)==4:
self.axes_to_sum = (0,2,3)
self.dimshuffle_args = ['x',0,'x','x']
else:
self.axes_to_sum = 0
self.dimshuffle_args = ['x',0]
# scale weights in layer below
incoming.W_param = incoming.W
#incoming.W_param.set_value(W.sample(incoming.W_param.get_value().shape))
if incoming.W_param.ndim==4:
if isinstance(incoming, Deconv2DLayer):
W_axes_to_sum = (0,2,3)
W_dimshuffle_args = ['x',0,'x','x']
else:
W_axes_to_sum = (1,2,3)
W_dimshuffle_args = [0,'x','x','x']
else:
W_axes_to_sum = 0
W_dimshuffle_args = ['x',0]
if g is not None:
incoming.W = incoming.W_param * (self.g/T.sqrt(1e-6 + T.sum(T.square(incoming.W_param),axis=W_axes_to_sum))).dimshuffle(*W_dimshuffle_args)
else:
incoming.W = incoming.W_param / T.sqrt(1e-6 + T.sum(T.square(incoming.W_param),axis=W_axes_to_sum,keepdims=True))
def __init__(self, numpy_rng, theano_rng=None,
n_ins=100,
layers_types=[ReLU, ReLU, ReLU, LogisticRegression],
layers_sizes=[1024, 1024, 1024],
n_outs=2,
rho=0.9, eps=1.E-6,
L1_reg=0.,
L2_reg=0.,
debugprint=False, mu=0.9):
"""
Feedforward neural network with added L1 and/or L2 regularization.
"""
super(RegularizedNet, self).__init__(numpy_rng, theano_rng, n_ins,
layers_types, layers_sizes, n_outs, rho, eps, debugprint, mu)
L1 = shared(0.)
for param in self.params:
L1 += T.sum(abs(param))
if L1_reg > 0.:
self.cost = self.cost + L1_reg * L1
L2 = shared(0.)
for param in self.params:
L2 += T.sum(param ** 2)
if L2_reg > 0.:
self.cost = self.cost + L2_reg * L2
def __init__(self, n_in, n_out, n_hidden, activation='tanh',
l1_reg=0.00, l2_reg=0.00):
BasicRNN.__init__(self, n_in, n_out, n_hidden, activation)
bh_init = np.zeros((n_hidden,), dtype=theano.config.floatX)
by_init = np.zeros((n_out,), dtype=theano.config.floatX)
self.bh = theano.shared(value=bh_init, name='bh')
self.by = theano.shared(value=by_init, name='by')
self.params = [self.U, self.W, self.V, self.bh, self.by]
# for every parameter, we maintain it's last update
# the idea here is to use "momentum"
# keep moving mostly in the same direction
self.velocity_updates = {}
for param in self.params:
init = np.zeros(param.get_value(borrow=True).shape, dtype=theano.config.floatX)
self.velocity_updates[param] = theano.shared(init)
self.L1_reg = float(l1_reg)
self.L2_reg = float(l2_reg)
# L1 norm ; one regularization option is to enforce L1 norm to
# be small
self.L1 = 0
self.L1 += abs(self.W.sum())
self.L1 += abs(self.U.sum())
# square of L2 norm ; one regularization option is to enforce
# square of L2 norm to be small
self.L2_sqr = 0
self.L2_sqr += T.sum(self.W ** 2)
self.L2_sqr += T.sum(self.U ** 2)
def get_output_for(self, input, init=False, **kwargs):
if input.ndim > 2:
# if the input has more than two dimensions, flatten it into a
# batch of feature vectors.
input = input.flatten(2)
activation = T.tensordot(input, self.W, [[1], [0]])
abs_dif = (T.sum(abs(activation.dimshuffle(0,1,2,'x') - activation.dimshuffle('x',1,2,0)),axis=2)
+ 1e6 * T.eye(input.shape[0]).dimshuffle(0,'x',1))
if init:
mean_min_abs_dif = 0.5 * T.mean(T.min(abs_dif, axis=2),axis=0)
abs_dif /= mean_min_abs_dif.dimshuffle('x',0,'x')
self.init_updates = [(self.log_weight_scale, self.log_weight_scale-T.log(mean_min_abs_dif).dimshuffle(0,'x'))]
f = T.sum(T.exp(-abs_dif),axis=2)
if init:
mf = T.mean(f,axis=0)
f -= mf.dimshuffle('x',0)
self.init_updates.append((self.b, -mf))
else:
f += self.b.dimshuffle('x',0)
return T.concatenate([input, f], axis=1)
def errors(self, y, print_output=False):
# check if y has same dimension of y_pred
if y.ndim != self.y_pred.ndim:
raise TypeError('y should have the same shape as self.y_pred', ('y', y.type, 'y_pred', self.y_pred.type))
# check if y is of the correct datatype
if y.dtype.startswith('int'):
num_positive = T.cast(T.sum(T.eq(y,1)),'float64')
num_predicted_positive = T.cast(T.sum(T.eq(self.y_pred,1)),'float64')
num_correctly_predicted = T.cast(T.sum(T.eq(self.y_pred*y,1)),'float64')
P = T.cast(0.0,'float64') # precision = True positive / (True positive + False positive)
if (T.gt(num_predicted_positive,0.0)):
P = T.cast(num_correctly_predicted / num_predicted_positive,'float64')
R = T.cast(0.0,'float64') # recall = True positive / (True positive + False negative)
if (T.gt(num_positive,0.0)):
R = T.cast(num_correctly_predicted / num_positive,'float64')
F1 = T.cast(0.0,'float64') # F1 score
if (T.gt(P+R,0.0)):
F1 = 2.0*P*R/(P+R)
if (print_output):
print(" num positive = {0}".format( num_positive ) )
print(" num predicted positive = {0}".format( num_predicted_positive ) )
print(" num correctly predicted = {0}".format( num_correctly_predicted ) )
print(" precision = {0}".format(P))
print(" recall = {0}".format(R))
print(" F1 score = {0}".format(F1))
return [T.mean(T.neq(self.y_pred, y)), P, R, F1]
else:
raise NotImplementedError()
return
def build_objective(model, deterministic=False, epsilon=1e-12):
predictions = nn.layers.get_output(model.l_out, deterministic=deterministic)
targets = nn.layers.get_output(model.l_target)
enable_targets = nn.layers.get_output(model.l_enable_target)
sum_of_objectives = 0
unit_ptr = 0
for obj_idx, obj_name in enumerate(order_objectives):
ptype = property_type[obj_name]
if ptype == 'classification':
num_units = len(property_bin_borders[obj_name])
v_obj = cce(obj_idx, (unit_ptr, unit_ptr+num_units), predictions, targets, epsilon)
# take the mean of the objectives where it matters (enabled targets)
obj_scalar = T.sum(enable_targets[:,obj_idx] * v_obj) / (0.00001 + T.sum(enable_targets[:,obj_idx]))
unit_ptr = unit_ptr + num_units
elif ptype == 'continuous':
v_obj = sqe(obj_idx, unit_ptr, predictions, targets)
obj_scalar = T.mean(v_obj)
unit_ptr += 1
else:
raise
if deterministic:
d_objectives_deterministic[obj_name] = obj_scalar
else:
d_objectives[obj_name] = obj_scalar
sum_of_objectives += norm_weights_loss[obj_name] * obj_scalar
return sum_of_objectives
def applyConstraint(self, param):
if param.ndim != 4 and param.ndim != 2:
warnings.warn("Norm constraints are normally applied to matrices"
+" or 4-dimensional tensors, but currently got "
+"%d dimensions, please make sure this is the desired"
+" parameter to apply norm constraints" % param.ndim)
needFlip = False
if param.ndim == 4: # a hack for conv layer filters
prevShape = param.shape
# conv layer filter shape is (nChannelOut, nChannelIn, r, c)
param = param.flatten(2)
# now it is (nout, nin), which is different from (nin, nout)
# from fulling connected networks, so need to flip here
needFlip = True
if needFlip:
col_norm = T.sqrt(T.sum(T.sqr(param), axis=1, keepdims=True))
else:
col_norm = T.sqrt(T.sum(T.sqr(param), axis=0, keepdims=True))
param /= (col_norm+1e-7)
param *= self.norm
if needFlip:
param = param.reshape(prevShape)
return param
def sequence_log_likelihood(y, y_hat, y_mask, y_hat_mask, blank_symbol, log_scale=True):
"""
Based on code from Shawn Tan.
Credits to Kyle Kastner as well.
This function computes the CTC log likelihood for a sequence that has
been augmented with blank labels.
"""
y_hat_mask_len = tensor.sum(y_hat_mask, axis=0, dtype="int32")
y_mask_len = tensor.sum(y_mask, axis=0, dtype="int32")
if log_scale:
log_probabs = _log_path_probabs(y, T.log(y_hat), y_mask, y_hat_mask, blank_symbol)
batch_size = log_probabs.shape[1]
# Add the probabilities of the final time steps to get the total
# sequence likelihood.
log_labels_probab = _log_add(
log_probabs[y_hat_mask_len - 1, tensor.arange(batch_size), y_mask_len - 1],
log_probabs[y_hat_mask_len - 1, tensor.arange(batch_size), y_mask_len - 2],
)
else:
probabilities = _path_probabs(y, y_hat, y_mask, y_hat_mask, blank_symbol)
batch_size = probabilities.shape[1]
labels_probab = (
probabilities[y_hat_mask_len - 1, tensor.arange(batch_size), y_mask_len - 1]
+ probabilities[y_hat_mask_len - 1, tensor.arange(batch_size), y_mask_len - 2]
)
log_labels_probab = tensor.log(labels_probab)
return log_labels_probab
def getRpRnTpTnForTrain0OrVal1(self, y, training0OrValidation1):
# The returned list has (numberOfClasses)x4 integers: >numberOfRealPositives, numberOfRealNegatives, numberOfTruePredictedPositives, numberOfTruePredictedNegatives< for each class (incl background).
# Order in the list is the natural order of the classes (ie class-0 RP,RN,TPP,TPN, class-1 RP,RN,TPP,TPN, class-2 RP,RN,TPP,TPN ...)
# param y: y = T.itensor4('y'). Dimensions [batchSize, r, c, z]
yPredToUse = self.y_pred_train if training0OrValidation1 == 0 else self.y_pred_val
checkDimsOfYpredAndYEqual(y, yPredToUse, "training" if training0OrValidation1 == 0 else "validation")
returnedListWithNumberOfRpRnTpTnForEachClass = []
for class_i in xrange(0, self._numberOfOutputClasses) :
#Number of Real Positive, Real Negatives, True Predicted Positives and True Predicted Negatives are reported PER CLASS (first for WHOLE).
tensorOneAtRealPos = T.eq(y, class_i)
tensorOneAtRealNeg = T.neq(y, class_i)
tensorOneAtPredictedPos = T.eq(yPredToUse, class_i)
tensorOneAtPredictedNeg = T.neq(yPredToUse, class_i)
tensorOneAtTruePos = T.and_(tensorOneAtRealPos,tensorOneAtPredictedPos)
tensorOneAtTrueNeg = T.and_(tensorOneAtRealNeg,tensorOneAtPredictedNeg)
returnedListWithNumberOfRpRnTpTnForEachClass.append( T.sum(tensorOneAtRealPos) )
returnedListWithNumberOfRpRnTpTnForEachClass.append( T.sum(tensorOneAtRealNeg) )
returnedListWithNumberOfRpRnTpTnForEachClass.append( T.sum(tensorOneAtTruePos) )
returnedListWithNumberOfRpRnTpTnForEachClass.append( T.sum(tensorOneAtTrueNeg) )
return returnedListWithNumberOfRpRnTpTnForEachClass
def ThangAttentionUnit(attention_state_prev, current_stack_top, premise_stack_tops, projected_stack_tops, attention_dim,
vs, name="attention_unit", initializer=None):
"""
Args:
attention_state_prev: The output of this unit at the previous time step.
current_stack_top: The current stack top (h state only, if applicable).
premise_stack_tops: The values to do attention over.
projected_stack_tops: Projected vectors to use to produce an attentive
weighting alpha_t.
attention_dim: The dimension of the vectors over which to do attention.
vs: A variable store for the learned parameters.
name: An identifier for the learned parameters in this unit.
initializer: Used to initialize the learned parameters.
Dimension notation:
B : Batch size
k : Model dim
L : num_transitions
"""
# Shape: B x L
score = T.sum(projected_stack_tops * current_stack_top, axis=2).T
alpha_t = T.nnet.softmax(score)
# Shape B x k
Y__alpha_t = T.sum(premise_stack_tops * alpha_t.T[:, :, np.newaxis], axis=0)
mlstm_input = T.concatenate([Y__alpha_t, current_stack_top], axis=1)
r_t = LSTMLayer(attention_state_prev, mlstm_input, 2 * attention_dim, 2 * attention_dim, vs, name="%s/lstm" % name)
return r_t
def finetune_cost_updates(self, center, mu, learning_rate):
""" This function computes the cost and the updates ."""
# note : we sum over the size of a datapoint; if we are using
# minibatches, L will be a vector, withd one entry per
# example in minibatch
network_output = self.get_output()
temp = T.pow(center - network_output, 2)
L = T.sum(temp, axis=1)
# Add the network reconstruction error
z = self.get_network_reconst()
reconst_err = T.sum(T.pow(self.x - z, 2), axis = 1)
L = self.beta*L + self.lbd*reconst_err
cost1 = T.mean(L)
cost2 = self.lbd*T.mean(reconst_err)
cost3 = cost1 - cost2
# compute the gradients of the cost of the `dA` with respect
# to its parameters
gparams = T.grad(cost1, self.params)
# generate the list of updates
updates = []
grad_values = []
param_norm = []
for param, delta, gparam in zip(self.params, self.delta, gparams):
updates.append( (delta, mu*delta - learning_rate * gparam) )
updates.append( (param, param + mu*mu*delta - (1+mu)*learning_rate*gparam ))
grad_values.append(gparam.norm(L=2))
param_norm.append(param.norm(L=2))
grad_ = T.stack(*grad_values)
param_ = T.stack(*param_norm)
return ((cost1, cost2, cost3, grad_, param_), updates)
def get_cost_updates(self, contraction_level, learning_rate):
""" This function computes the cost and the updates for one trainng
step of the cA """
y = self.get_hidden_values(self.x)
z = self.get_reconstructed_input(y)
J = self.get_jacobian(y, self.W)
# note : we sum over the size of a datapoint; if we are using
# minibatches, L will be a vector, with one entry per
# example in minibatch
self.L_rec = - T.sum(self.x * T.log(z) +
(1 - self.x) * T.log(1 - z),
axis=1)
# Compute the jacobian and average over the number of samples/minibatch
self.L_jacob = T.sum(J ** 2) // self.n_batchsize
# note : L is now a vector, where each element is the
# cross-entropy cost of the reconstruction of the
# corresponding example of the minibatch. We need to
# compute the average of all these to get the cost of
# the minibatch
cost = T.mean(self.L_rec) + contraction_level * T.mean(self.L_jacob)
# compute the gradients of the cost of the `cA` with respect
# to its parameters
gparams = T.grad(cost, self.params)
# generate the list of updates
updates = []
for param, gparam in zip(self.params, gparams):
updates.append((param, param - learning_rate * gparam))
return (cost, updates)
def output_probabilistic(self, m_w_previous, v_w_previous):
if (self.non_linear):
m_in = self.m_w - m_w_previous
v_in = self.v_w
# We compute the mean and variance after the ReLU activation
lam = self.lam
v_1 = 1 + 2*lam*v_in
v_1_inv = v_1**-1
s_1 = T.prod(v_1,axis=1)**-0.5
v_2 = 1 + 4*lam*v_in
v_2_inv = v_2**-1
s_2 = T.prod(v_2,axis=1)**-0.5
v_inv = v_in**-1
exponent1 = m_in**2*(1 - v_1_inv)*v_inv
exponent1 = T.sum(exponent1,axis=1)
exponent2 = m_in**2*(1 - v_2_inv)*v_inv
exponent2 = T.sum(exponent2,axis=1)
m_a = s_1*T.exp(-0.5*exponent1)
v_a = s_2*T.exp(-0.5*exponent2) - m_a**2
return (m_a, v_a)
else:
m_w_previous_with_bias = \
T.concatenate([ m_w_previous, T.alloc(1, 1) ], 0)
v_w_previous_with_bias = \
T.concatenate([ v_w_previous, T.alloc(0, 1) ], 0)
m_linear = T.dot(self.m_w, m_w_previous_with_bias) / T.sqrt(self.n_inputs)
v_linear = (T.dot(self.v_w, v_w_previous_with_bias) + \
T.dot(self.m_w**2, v_w_previous_with_bias) + \
T.dot(self.v_w, m_w_previous_with_bias**2)) / self.n_inputs
return (m_linear, v_linear)
def __theano_build__(self):
E, V, U, W, b, c = self.E, self.V, self.U, self.W, self.b, self.c
x_a = T.ivector('x_a')
x_b = T.ivector('x_b')
y = T.lvector('y')
def forward_step(x_t, s_t_prev):
# Word embedding layer
x_e = E[:, x_t]
# GRU layer 1
z_t = T.nnet.hard_sigmoid(U[0].dot(x_e) + W[0].dot(s_t_prev))
r_t = T.nnet.hard_sigmoid(U[1].dot(x_e) + W[1].dot(s_t_prev))
c_t = T.tanh(U[2].dot(x_e) + W[2].dot(s_t_prev * r_t))
s_t = (T.ones_like(z_t) - z_t) * c_t + z_t * s_t_prev
# directly return the hidden state as intermidate output
return [s_t]
# sentence a vector (states)
a_s, updates = theano.scan(forward_step,
sequences=x_a,
truncate_gradient=self.bptt_truncate,
outputs_info=T.zeros(self.hidden_dim))
# sentence b vector (states)
b_s, updates = theano.scan(forward_step,
sequences=x_b,
truncate_gradient=self.bptt_truncate,
outputs_info=T.zeros(self.hidden_dim))
# semantic similarity
# s_sim = manhattan_distance(a_s[-1],b_s[-1])
# for classification using simple strategy
sena = a_s[-1]
senb = b_s[-1]
combined_s = T.concatenate([sena, senb], axis=0)
# softmax class
o = T.nnet.softmax(V.dot(combined_s) + c)[0]
# in case the o contains 0 which cause inf
eps = np.asarray([1.0e-10] * self.label_dim,
dtype=theano.config.floatX)
o = o + eps
om = o.reshape((1, o.shape[0]))
prediction = T.argmax(om, axis=1)
o_error = T.nnet.categorical_crossentropy(om, y)
# cost
cost = T.sum(o_error)
# updates
updates = sgd_updates_adadelta(norm=0, params=self.params, cost=cost)
# monitor parameter
mV = V * T.ones_like(V)
mc = c * T.ones_like(c)
mU = U * T.ones_like(U)
mW = W * T.ones_like(W)
gV = T.grad(cost, V)
gc = T.grad(cost, c)
gU = T.grad(cost, U)
gW = T.grad(cost, W)
mgV = gV * T.ones_like(gV)
mgc = gc * T.ones_like(gc)
mgU = gU * T.ones_like(gU)
mgW = gW * T.ones_like(gW)
# Assign functions
self.monitor = theano.function([x_a, x_b],
[sena, senb, mV, mc, mU, mW])
self.monitor_grad = theano.function([x_a, x_b, y],
[mgV, mgc, mgU, mgW])
self.predict = theano.function([x_a, x_b], om)
self.predict_class = theano.function([x_a, x_b], prediction)
self.ce_error = theano.function([x_a, x_b, y], cost)
# self.bptt = theano.function([x,y],[dE,dU,dW,db,dV,dc])
# SGD parameters
learning_rate = T.scalar('learning_rate')
decay = T.scalar('decay')
# rmsprop cache updates
# find the nan
self.sgd_step = theano.function(
[x_a, x_b, y], [],
updates=updates
# mode=NanGuardMode(nan_is_error=True, inf_is_error=True, big_is_error=True)
)
def __init__(self, layer_def, inputs, inputs_shape, rs, clone_from=None):
"""
Create a Dirichlet layer, according to the following paper:
Malmir M, Sikka K, Forster D, Fasel I, Movellan JR, Cottrell GW.
Deep Active Object Recognition by Joint Label and Action Prediction.
arXiv preprint arXiv:1512.05484. 2015 Dec 17.
Each unit in this layer encodes a Dicihlet distribution over its input.
The input is assumed to be a belief vector, i.e. \sum_i input[i] = 1, 0 <= input_i <= 1 for all i
:type layer_def: Element, xml containing configu for Conv layer
:type inputs: a list of [belief_in, actions, objects, previous_belief]
:param inputs[0], belief_in, is a theano.matrix which contains belief vectors in its columns
:param inputs[1], actions, theano.ivector, list of actions for each column of belief_in
:param inputs[2], objects, theano.ivector, list of objects for each column of belief_in
:param inputs[3], previous_belief, theano.matrix, used to accumulate beliefs over time
:type input_shapes: list of sizes of inputs
:type rs: a random number generator used to initialize weights
"""
assert (
len(inputs) == 4
) #belief dim x bacth_sz, actions: 1 x batch_size, objects 1 x batch_sz, accbelief (numActs*numObjs) x batch_sz
beliefs, actions, objects, accbeliefs = inputs
self.inputs = inputs # beliefs, actions, objects
dim = inputs_shape[0][0]
assert (inputs_shape[0][1] == inputs_shape[1][1]) #batch_size
assert (inputs_shape[0][1] == inputs_shape[2][1]) #batch_size
assert (inputs_shape[0][1] == inputs_shape[3][1]) #batch_size
assert (inputs_shape[1][0] == 1) #action is a single integer
assert (inputs_shape[2][0] == 1) #object label is a single integer
batch_size = inputs_shape[0][1]
self.numActions = int(layer_def.find("numActions").text)
self.numObjects = int(layer_def.find("numObjects").text)
assert (self.numObjects * self.numActions == inputs_shape[3][0])
assert (self.numObjects == dim)
#total number of dirichlet units = numActions x numObjects
num_dirichlets = self.numObjects * self.numActions
if clone_from == None:
self.alphas = theano.shared(np.random.randint(
5, 30, [dim, num_dirichlets]).astype(theano.config.floatX) /
25.,
borrow=True) # dim x num_dirichlets
else:
self.alphas = clone_from.alphas
#self.alphas = theano.shared(0.7* np.ones([dim,num_dirichlets]).astype(theano.config.floatX),borrow=True)# dim x num_dirichlets
#remove 0 from the input belief
normalized_beliefs = beliefs + 1.e-6
normalized_beliefs = normalized_beliefs / T.reshape(
T.sum(normalized_beliefs, axis=0), [1, batch_size])
log_normed_beliefs = T.log(normalized_beliefs) # dim x batch_size
self.log_normed = log_normed_beliefs
#calculate Dirichlet probs for the current normalize beliefs
self.term1 = T.reshape(T.gammaln(T.sum(self.alphas, axis=0)),
[num_dirichlets, 1])
self.term2 = T.reshape(T.sum(T.gammaln(self.alphas), axis=0),
[num_dirichlets, 1])
self.term3 = T.dot(T.transpose(self.alphas - 1.),
log_normed_beliefs) # num_dirichlets x batch_size
#find a mask based on the actions
dirichlet_actions = np.tile(
np.arange(self.numActions).reshape([-1, 1]), [self.numObjects, 1])
dirichlet_actions = np.tile(dirichlet_actions, [1, batch_size])
dirichlet_actions = theano.shared(dirichlet_actions.astype(
theano.config.floatX),
borrow=True)
in_actions = T.tile(T.reshape(actions, [1, batch_size]),
[num_dirichlets, 1])
self.eq_actions = T.eq(dirichlet_actions, in_actions)
#self.current_belief = T.exp(self.term1 - self.term2 + self.eq_actions * self.term3) #this should be normalized for each column
log_cur_belief = self.term1 - self.term2 + self.eq_actions * self.term3 #this should be normalized for each column
#log_cur_belief = self.term1 - self.term2 + self.term3 #this should be normalized for each column
log_cur_belief_normd = log_cur_belief - T.reshape(
T.max(log_cur_belief, axis=0), [1, batch_size])
cur_blf = self.eq_actions * T.exp(log_cur_belief_normd)
self.current_belief = cur_blf / T.sum(cur_blf, axis=0)
acc_is_zero = T.eq(accbeliefs, 0.)
accbeliefs_no_0 = acc_is_zero + (1. - acc_is_zero) * accbeliefs
updated_belief = self.eq_actions * self.current_belief * accbeliefs_no_0 + (
1. - self.eq_actions) * accbeliefs # num_dirichlet x batch_size
sum_up_blf = T.reshape(T.sum(updated_belief, axis=0), [1, batch_size])
#sum_up_blf_normed = T.switch( T.eq(sum_up_blf, 0.) , np.ones([1,batch_size]).astype(theano.config.floatX),sum_up_blf)
#self.updated_belief = updated_belief / sum_up_blf_normed
self.updated_belief = updated_belief / sum_up_blf
self.output = self.updated_belief
#self.updated_belief = self.current_belief
#construct the outputs
# for each class, assign 1s to the components that indicate P(a,o|x)
#weights_marginalize = np.zeros([self.numObjects,num_dirichlets],dtype=theano.config.floatX)
#for i in range(self.numObjects):
# weights_marginalize[i,i*self.numActions:(i+1)*self.numActions] = 1.
#weights_margin = theano.shared( weights_marginalize , borrow=True)
#self.output = T.dot( weights_margin, self.updated_belief)
#calculating weight updates
objects_idx = np.tile(
np.arange(self.numObjects).reshape([-1, 1]),
[1, self.numActions]).reshape([1, -1])
objects_idx = np.tile(objects_idx.reshape([-1, 1]),
[1, batch_size]) # num_dirichlets x batch_size
objects_idx = theano.shared(objects_idx.astype(theano.config.floatX),
borrow=True)
in_objects = T.tile(T.reshape(objects, [1, batch_size]),
[num_dirichlets, 1]) # num_dirichlets x batch_size
self.idx = self.eq_actions * T.eq(
objects_idx, in_objects) # num_dirichlets x batch_size
self.idx = self.idx.astype(theano.config.floatX)
self.N = T.reshape(T.sum(self.idx, axis=1), [1, num_dirichlets])
#take care of 0 in the input to avoid nan in log
term5 = T.dot(log_normed_beliefs,
T.transpose(self.idx)) #dim x num_dirichlets
self.update = self.N * T.reshape(T.psi(T.sum(self.alphas, axis=0)),
[1, num_dirichlets]) - self.N * T.psi(
self.alphas) + term5
#self.update = T.psi(self.alphas) + term5
#calculate log-prob of data ndirichlets ndirichlets
dir_l_p = self.N * T.gammaln(T.sum(
self.alphas, axis=0)) - self.N * T.sum(
T.gammaln(self.alphas), axis=0) + T.sum(
term5 * (self.alphas - 1.), axis=0)
self.log_p_ao = T.mean(dir_l_p)
self.params = [self.alphas]
self.inputs_shape = inputs_shape
#self.output_shape = [dim,batch_size]
self.output_shape = [num_dirichlets, batch_size]
def __init__(self, num_actions):
# remember parameters
self.num_actions = num_actions
# batch size is T_MAX now
self.batch_size = T_MAX #BATCH_SIZE
self.discount_rate = DISCOUNT_RATE
self.history_length = HISTORY_LENGTH
self.screen_dim = DIMS
self.img_height = SCREEN_HEIGHT
self.img_width = SCREEN_WIDTH
self.beta = BETA
self.learning_rate = LEARNING_RATE
self.rms_decay = RMS_DECAY
self.rms_epsilon = RMS_EPSILON
# prepare tensors once and reuse them
state = T.tensor4('state')
reward = T.fvector('reward')
advantage = T.fvector('advantage')
action = T.ivector('action')
#beta = T.fscalar('regularization_rate')
# set learning rate
#self.shared_beta = theano.shared(np.zeros((1)), dtype=theano.config.floatX ,
# broadcastable=(True))
#self.shared_beta.set_value([BETA])
# create shared theano variables
self.state_shared = theano.shared(
np.zeros((self.batch_size, self.history_length, self.img_height,
self.img_width),
dtype=theano.config.floatX))
self.reward_shared = theano.shared(
np.zeros((self.batch_size), dtype=theano.config.floatX))
self.advantage_shared = theano.shared(
np.zeros((self.batch_size), dtype=theano.config.floatX))
self.action_shared = theano.shared(
np.zeros((self.batch_size), dtype='int32'))
# can add multiple nets here
# Shared network parameters here
self.shared_net = self.build_shared_network()
shared_out = lasagne.layers.get_output(self.shared_net, state)
####### OPTIMIZATION here --------------
# Policy network parameters here
self.policy_network = self.build_policy_network()
policy_out = lasagne.layers.get_output(self.policy_network, shared_out)
# Value network parameters here
self.value_network = self.build_value_network()
value_out = lasagne.layers.get_output(self.value_network, shared_out)
## ----------------------- LOSS FUNCTION SHIT STARTS HERE ----------------------------------------
N = state.shape[0]
# take log policy loss
policy_loss = -T.log(policy_out[
T.arange(N), self.action_shared]) * self.advantage_shared
# take entropy and add with the regularizer
entropy = -T.sum(-policy_out * T.log(policy_out), axis=1)
# add regullazrization
policy_loss += self.beta * entropy
#policy_loss = T.sum(policy_loss)
# get the value loss
value_loss = (
(self.reward_shared - T.reshape(value_out,
(self.batch_size, )))**2) / 2
#value_loss = T.sum(value_loss)
total_loss = T.sum(policy_loss + (0.5 * value_loss))
## ----------------------- LOSS FUNCTION SHIT ENDS HERE ----------------------------------------
shared_params = lasagne.layers.helper.get_all_params(self.shared_net)
only_policy_params = lasagne.layers.helper.get_all_params(
self.policy_network)
only_value_params = lasagne.layers.helper.get_all_params(
self.value_network)
policy_params = shared_params + only_policy_params
value_params = shared_params + only_value_params
g_time = time.time()
logger.info("graph compiling")
# get grads here
policy_grad = T.grad(total_loss, policy_params)
value_grad = T.grad(total_loss, value_params)
# there'll be two kind of updates
policy_updates = rmsprop_updates(policy_grad, policy_params,
self.learning_rate, self.rms_decay,
self.rms_epsilon)
value_updates = rmsprop_updates(value_grad, value_params,
self.learning_rate, self.rms_decay,
self.rms_epsilon)
givens = {
state: self.state_shared,
reward: self.reward_shared,
action: self.action_shared,
advantage: self.advantage_shared,
}
# theano functions for accumulating the grads
self._policy_grad = theano.function([], policy_grad, givens=givens)
self._value_grad = theano.function([], value_grad, givens=givens)
# train will take input the grads and just apply them
# NEEDS work here ------------
self._train_policy = theano.function([], [],
updates=policy_updates,
givens=givens)
self._train_value = theano.function([], [],
updates=value_updates,
givens=givens)
# get output for a state
self._policy = theano.function([],
policy_out,
givens={state: self.state_shared})
self._value = theano.function([],
value_out,
givens={state: self.state_shared})
# need more theano functions for getting policy and value
logger.info("Theano Graph Compiled !! %f", time.time() - g_time)
def get_detections(self, model, data_x, data_m, params):
pr_threshold = params.get("prThreshold", 0.01)
nms_threshold = params.get("nmsThreshold", 0.5)
corner_threshold = params.get("cornerThreshold", self.sparse_layer.corner_threshold)
corner_max = params.get("cornerMax", 1024)
use_soft_nms = params.get("useSoftNMS", 0) == 1
t = (pr_threshold, nms_threshold, corner_threshold, corner_max)
logging.verbose("Using detection params - pr threshold: %f, nms threshold: %f, corner_threshold: %f, corner_max: %i"%t)
first_detect = False
if self.detect_func is None:
#get all model outputs
outputs=[]
if self.use_jointfit:
det_fit = self.det_pr
det_fit_null = det_fit[:, self.null_class, :, :]
det_fit = det_fit[:,:self.class_num*self.fitness_num, :, :]
det_fit = det_fit.reshape((self.batch_size, self.class_num, self.fitness_num, self.sample_num, self.sample_num))
det_fit_pr = tensor.exp(det_fit)
m = tensor.max(det_fit, axis=2)
det_pr = m + tensor.log(tensor.sum(tensor.exp(det_fit - m[:,:,None,:,:]), axis=2))
det_pr = tensor.concatenate([det_pr, det_fit_null[:,None,:,:]], axis=1)
outputs.append(det_pr)
val = [self.overlap_threshold[0] + i*(1.0 - self.overlap_threshold[0])/self.fitness_num for i in range(self.fitness_num)]
fitness_val = theano.shared(numpy.array(val, dtype=numpy.float32))
fitness = tensor.log(tensor.sum(det_fit_pr*fitness_val[None,None,:,None,None], axis=2))
outputs.append(fitness)
else:
outputs.append(self.det_pr)
if self.use_bbox_reg:
outputs.append(self.bbox_predict)
if self.use_indfit:
outputs.append(tensor.exp(self.indfit_pr))
logging.info("Building detection function")
self.detect_func = theano.function([model.input], outputs, givens=[(get_train(), tensor.cast(0, 'int8'))], on_unused_input='ignore')
logging.verbose("Exporting graph...")
with open("detect_graph.txt", "w") as f:
theano.printing.debugprint(self.detect_func, file=f, print_type=True)
first_detect = True
#get sampling bounding boxs
logging.verbose("Detecting sample bboxs (%.2f)"%corner_threshold)
timer = common.Timer()
sample_bboxs = self.sparse_layer.get_samples(data_x, train=False, store_shared=True)
timer.mark()
logging.verbose("Found sample bboxs: {}".format([len(bbox) for bbox in sample_bboxs]))
#upload sampling bounding boxs
bboxs = self.sparse_layer.set_samples(sample_bboxs)
timer.mark()
#classify sampling bounding boxs
r = list(self.detect_func(data_x))
#get outputs
if self.use_jointfit:
det_pr = r[0]
fitness = r[1]
r_index = 2
else:
det_pr = r[0]
fitness = numpy.copy(det_pr)
r_index = 1
if self.use_bbox_reg:
bboxs = r[r_index]
r_index += 1
else:
bboxs = self.sparse_layer.get_bbox_array(sample_bboxs)
if self.use_indfit:
indfit_pr = r[r_index]
fitness_val = numpy.array([0.0] + [self.overlap_threshold[0] + i * (1.0 - self.overlap_threshold[0])/(self.fitness_num-1) for i in range(self.fitness_num-1)])
fitness_exp = numpy.sum(indfit_pr*fitness_val[None,:,None,None], axis=1).astype(numpy.float32)
fitness += numpy.log(fitness_exp)[:,None,:,:]
r_index += 1
timer.mark()
sample_bbox_num = [len(s) for s in sample_bboxs]
detlists = c_code.build_detections_nms(pr_threshold, nms_threshold, use_soft_nms, det_pr, fitness, bboxs, sample_bbox_num)
timer.mark()
logging.verbose("Found detections:", [len(detlist) for detlist in detlists])
logging.verbose("FPS=%.1f, Timing (ms) - get samples: %i, upload: %i, classify: %i, build+nms %i"%tuple([self.batch_size / timer.current()] + timer.deltas_ms()))
if not first_detect:
global detect_time, detect_num
detect_time += timer.current()
detect_num += self.batch_size
logging.info("Average FPS=%.1f"%(detect_num / detect_time))
#results format
results=[]
for i, detlist in enumerate(detlists):
results.append({"detections":detlist, "meta":data_m[i]})
return results
def get_errors(self, yt_index, yt_value):
#unpack indexs and values
shapes = [self.det_shape]
if self.use_bbox_reg:
shapes += [(self.batch_size, self.sample_num, self.sample_num), (self.batch_size, 8, self.sample_num, self.sample_num)]
if self.use_indfit:
shapes += [self.indfit_shape]
v = common.ndarray_unpack(yt_value, shapes)
det_pr = v[0]
index = 1
if self.use_bbox_reg:
bbox_valid, bbox_reg = v[index:(index+2)]
index += 2
if self.use_indfit:
indfit_pr = v[index:(index+1)]
#Detection Cost:
det_errors = -tensor.sum(det_pr*self.det_pr, axis=1) / math.log(self.det_shape[1])
#Bounding Box Regression Cost:
bbox_errors = None
if self.use_bbox_reg and self.bbox_factor > 0.0:
bbox_target = bbox_reg[:,0:4,...]
bbox_sample = bbox_reg[:,4:8,...]
bbox_errors = tensor.zeros((self.batch_size, self.sample_num, self.sample_num), dtype=numpy.float32)
if self.use_bounded_iou:
target_x = bbox_target[:,0,:,:]
target_y = bbox_target[:,1,:,:]
target_w = bbox_target[:,2,:,:]
target_h = bbox_target[:,3,:,:]
predict_x = 0.5*(self.bbox_predict[:,:,:,0] + self.bbox_predict[:,:,:,2])
predict_y = 0.5*(self.bbox_predict[:,:,:,1] + self.bbox_predict[:,:,:,3])
predict_w = self.bbox_predict[:,:,:,2] - self.bbox_predict[:,:,:,0]
predict_h = self.bbox_predict[:,:,:,3] - self.bbox_predict[:,:,:,1]
dx = target_x - predict_x
dy = target_y - predict_y
eps = 0.001
#ORIGINAL Paper used 4*dx, proper implementation is 2*dx
cost_x = tensor.switch(dx >= 0.0, 2*dx / (target_w + dx + eps), -2*dx / (target_w - dx + eps))
cost_y = tensor.switch(dy >= 0.0, 2*dy / (target_h + dy + eps), -2*dy / (target_h - dy + eps))
cost_w = 1.0 - tensor.minimum(target_w / (predict_w + eps), predict_w / (target_w + eps))
cost_h = 1.0 - tensor.minimum(target_h / (predict_h + eps), predict_h / (target_h + eps))
cost = tensor.concatenate([cost_x[:,None,:,:], cost_y[:,None,:,:], cost_w[:,None,:,:], cost_h[:,None,:,:]], axis=1)
bbox_errors += self.bbox_factor*bbox_valid*tensor.sum(theano_util.smooth_L1(cost), axis=1)
else:
#standard Fast R-CNN style cost
tx = (bbox_target[:, 0, ...] - bbox_sample[:, 0, ...]) / bbox_sample[:, 2, ...]
ty = (bbox_target[:, 1, ...] - bbox_sample[:, 1, ...]) / bbox_sample[:, 3, ...]
tw = tensor.log(bbox_target[:, 2, ...] / bbox_sample[:, 2, ...])
th = tensor.log(bbox_target[:, 3, ...] / bbox_sample[:, 3, ...])
t = tensor.concatenate([tx[:,None, ...], ty[:,None, ...], tw[:,None, ...], th[:,None, ...]], axis=1)
dt = t - self.bbox_reg
bbox_errors += self.bbox_factor*bbox_valid*tensor.sum(theano_util.smooth_L1(dt), axis=1)
indfit_errors = None
if self.use_indfit:
indfit_errors = -tensor.sum(indfit_pr*self.indfit_pr, axis=1) / math.log(self.fitness_num)
return det_errors, bbox_errors, indfit_errors
def __init__(self, config, vocab_size):
question = tensor.imatrix('question')
question_mask = tensor.imatrix('question_mask')
context = tensor.imatrix('context')
context_mask = tensor.imatrix('context_mask')
answer = tensor.imatrix('answer')
answer_mask = tensor.imatrix('answer_mask')
bricks = []
question = question.dimshuffle(1, 0)
question_mask = question_mask.dimshuffle(1, 0)
context = context.dimshuffle(1, 0)
context_mask = context_mask.dimshuffle(1, 0)
answer = answer.dimshuffle(1, 0)
answer_mask = answer_mask.dimshuffle(1, 0)
# Embed questions and context
embed = LookupTable(vocab_size, config.embed_size, name='question_embed')
embed.weights_init = IsotropicGaussian(0.01)
# Calculate question encoding (concatenate layer1)
qembed = embed.apply(question)
qlstms, qhidden_list = make_bidir_lstm_stack(qembed, config.embed_size, question_mask.astype(theano.config.floatX),
config.question_lstm_size, config.question_skip_connections, 'q')
bricks = bricks + qlstms
if config.question_skip_connections:
qenc_dim = 2*sum(config.question_lstm_size)
qenc = tensor.concatenate([h[-1,:,:] for h in qhidden_list], axis=1)
else:
qenc_dim = 2*config.question_lstm_size[-1]
qenc = tensor.concatenate([h[-1,:,:] for h in qhidden_list[-2:]], axis=1)
qenc.name = 'qenc'
# Calculate context encoding (concatenate layer1)
cembed = embed.apply(context)
cqembed = tensor.concatenate([cembed, tensor.extra_ops.repeat(qenc[None, :, :], cembed.shape[0], axis=0)], axis=2)
clstms, chidden_list = make_bidir_lstm_stack(cqembed, config.embed_size + qenc_dim, context_mask.astype(theano.config.floatX),
config.ctx_lstm_size, config.ctx_skip_connections, 'ctx')
bricks = bricks + clstms
if config.ctx_skip_connections:
cenc_dim = 2*sum(config.ctx_lstm_size) #2 : fw & bw
cenc = tensor.concatenate(chidden_list, axis=2)
else:
cenc_dim = 2*config.question_lstm_size[-1]
cenc = tensor.concatenate(chidden_list[-2:], axis=2)
cenc.name = 'cenc'
# Attention mechanism MLP start
attention_mlp_start = MLP(dims=config.attention_mlp_hidden + [1],
activations=config.attention_mlp_activations[1:] + [Identity()],
name='attention_mlp_start')
attention_qlinear_start = Linear(input_dim=qenc_dim, output_dim=config.attention_mlp_hidden[0], name='attq_start') #Wum
attention_clinear_start = Linear(input_dim=cenc_dim, output_dim=config.attention_mlp_hidden[0], use_bias=False, name='attc_start') # Wym
bricks += [attention_mlp_start, attention_qlinear_start, attention_clinear_start]
layer1_start = Tanh(name='layer1_start')
layer1_start = layer1_start.apply(attention_clinear_start.apply(cenc.reshape((cenc.shape[0]*cenc.shape[1], cenc.shape[2])))
.reshape((cenc.shape[0],cenc.shape[1],config.attention_mlp_hidden[0]))
+ attention_qlinear_start.apply(qenc)[None, :, :])
att_weights_start = attention_mlp_start.apply(layer1_start.reshape((layer1_start.shape[0]*layer1_start.shape[1], layer1_start.shape[2])))
att_weights_start = att_weights_start.reshape((layer1_start.shape[0], layer1_start.shape[1]))
att_weights_start = tensor.nnet.softmax(att_weights_start.T).T
attended = tensor.sum(cenc * att_weights_start[:, :, None], axis=0)
attended.name = 'attended'
# Attention mechanism MLP end
attention_mlp_end = MLP(dims=config.attention_mlp_hidden + [1],
activations=config.attention_mlp_activations[1:] + [Identity()],
name='attention_mlp_end')
attention_qlinear_end = Linear(input_dim=qenc_dim, output_dim=config.attention_mlp_hidden[0], name='attq_end') #Wum
attention_clinear_end = Linear(input_dim=cenc_dim, output_dim=config.attention_mlp_hidden[0], use_bias=False, name='attc_end') # Wym
bricks += [attention_mlp_end, attention_qlinear_end, attention_clinear_end]
layer1_end = Tanh(name='layer1_end')
layer1_end = layer1_end.apply(attention_clinear_end.apply(cenc.reshape((cenc.shape[0]*cenc.shape[1], cenc.shape[2])))
.reshape((cenc.shape[0],cenc.shape[1],config.attention_mlp_hidden[0]))
+ attention_qlinear_end.apply(attended)[None, :, :])
att_weights_end = attention_mlp_end.apply(layer1_end.reshape((layer1_end.shape[0]*layer1_end.shape[1], layer1_end.shape[2])))
att_weights_end = att_weights_end.reshape((layer1_end.shape[0], layer1_end.shape[1]))
att_weights_end = tensor.nnet.softmax(att_weights_end.T).T
att_weights_start = tensor.dot(tensor.le(tensor.tile(theano.tensor.arange(context.shape[0])[None,:], (context.shape[0], 1)),
tensor.tile(theano.tensor.arange(context.shape[0])[:,None], (1, context.shape[0]))), att_weights_start)
att_weights_end = tensor.dot(tensor.ge(tensor.tile(theano.tensor.arange(context.shape[0])[None,:], (context.shape[0], 1)),
tensor.tile(theano.tensor.arange(context.shape[0])[:,None], (1, context.shape[0]))), att_weights_end)
# add attention from left and right
#att_weights = att_weights_start * att_weights_end
att_weights = tensor.minimum(att_weights_start, att_weights_end)
att_target = tensor.eq(tensor.tile(answer[None,:,:], (context.shape[0], 1, 1)),
tensor.tile(context[:,None,:], (1, answer.shape[0], 1))).sum(axis=1).clip(0,1)
self.predictions = tensor.gt(att_weights, 0.5) * context
att_target = att_target / (att_target.sum(axis=0) + 0.00001)
att_weights = att_weights / (att_weights.sum(axis=0) + 0.00001)
cost = (tensor.nnet.binary_crossentropy(att_weights, att_target) * context_mask).sum() / context_mask.sum()
# Apply dropout
cg = ComputationGraph([cost])
if config.w_noise > 0:
noise_vars = VariableFilter(roles=[WEIGHT])(cg)
cg = apply_noise(cg, noise_vars, config.w_noise)
if config.dropout > 0:
cg = apply_dropout(cg, qhidden_list + chidden_list, config.dropout)
[cost_reg] = cg.outputs
# Other stuff
cost.name = 'cost'
cost_reg.name = 'cost_reg'
att_weights_start.name = 'att_weights_start'
att_weights_end.name = 'att_weights_end'
att_target.name = 'att_target'
att_weights.name = 'att_weights'
self.predictions.name = 'pred'
self.sgd_cost = cost_reg
self.monitor_vars = [[cost_reg]]
self.monitor_vars_valid = [[cost_reg]]
self.analyse_vars= [cost, self.predictions, att_weights_start, att_weights_end, att_weights, att_target]
# Initialize bricks
embed.initialize()
for brick in bricks:
brick.weights_init = config.weights_init
brick.biases_init = config.biases_init
brick.initialize()
def test_batch_normalization_train_broadcast():
for axes in ('per-activation', 'spatial', (1, 2, 3, 4)):
for vartype in (T.tensor5, T.tensor4, T.tensor3, T.matrix, T.vector):
x = vartype('x')
ndim = x.ndim
eps = 5e-3 # some non-standard value to test if it's used
running_average_factor = 0.3
# remove non-existing axes
if isinstance(axes, tuple):
axes = tuple(i for i in axes if i < ndim)
if len(axes) == 0:
continue
# convert axes to explicit list
if axes == 'per-activation':
axes2 = (0, )
elif axes == 'spatial':
axes2 = (0, ) + tuple(range(2, ndim))
else:
axes2 = axes
# compute axes for parameter tensors
non_bc_axes = tuple(i for i in range(ndim) if i not in axes2)
params_dimshuffle = ['x'] * ndim
for i, axis in enumerate(non_bc_axes):
params_dimshuffle[axis] = i
# construct non-broadcasted parameter variables
param_type = T.TensorType(x.dtype, (False, ) * len(non_bc_axes))
scale, bias, running_mean, running_var = (param_type(n)
for n in ('scale',
'bias',
'running_mean',
'running_var'))
# broadcast parameter variables
scale_bc = scale.dimshuffle(params_dimshuffle)
bias_bc = bias.dimshuffle(params_dimshuffle)
running_mean_bc = running_mean.dimshuffle(params_dimshuffle)
running_var_bc = running_var.dimshuffle(params_dimshuffle)
# batch_normalization_train with original, non-broadcasted variables
train_non_bc = \
bn.batch_normalization_train(
x, scale, bias, axes, eps,
running_average_factor, running_mean, running_var)
# batch_normalization_train with broadcasted variables
train_bc = \
bn.batch_normalization_train(
x, scale_bc, bias_bc, axes, eps,
running_average_factor, running_mean_bc, running_var_bc)
train_bc = tuple([train_bc[0]] + # out
[r.dimshuffle(non_bc_axes) for r in train_bc[1:]])
# batch_normalization_test with original, non-broadcasted variables
test_non_bc = \
bn.batch_normalization_test(
x, scale, bias, running_mean, running_var, axes, eps)
# batch_normalization_test with broadcasted variables
test_bc = \
bn.batch_normalization_test(
x, scale_bc, bias_bc, running_mean_bc, running_var_bc, axes, eps)
# subtract the results of the non-broadcasted and broadcasted calls
results_non_bc = train_non_bc + (test_non_bc, )
results_bc = train_bc + (test_bc, )
results = [
abs(r - r_bc) for (r, r_bc) in zip(results_non_bc, results_bc)
]
# compile to compute all differences
f = theano.function([x, scale, bias, running_mean, running_var],
T.sum(sum(results)))
# the paired ops are exactly the same, so the optimizer should have
# collapsed the sum of differences to a constant zero
nodes = f.maker.fgraph.toposort()
if theano.config.mode != "FAST_COMPILE":
assert len(nodes) == 1
assert isinstance(nodes[0].op, theano.compile.DeepCopyOp)
inputs = [
np.asarray(np.random.rand(*((4, ) * n)), x.dtype) for n in [
x.ndim, scale.ndim, bias.ndim, running_mean.ndim,
running_var.ndim
]
]
assert 0.0 == f(*inputs)
def hybrid_loss(y, t):
log_loss = categorical_crossentropy(y, t).mean()
kappa_loss = quad_kappa_loss(y, t, y_pow=2)
return kappa_loss + 0.5 * T.clip(log_loss, 0.6, 10**3)
def discrete_predict(predictions):
return T.round(T.clip(predictions, 0, 4))
predictions = nn.layers.get_output(output_layer, deterministic=False)
train_log_loss, train_reg_loss, train_multi_loss = multi_task_loss(
predictions, y)
params = nn.layers.get_all_params(output_layer, regularizable=True)
regularization = sum(T.sum(p**2) for p in params)
train_loss = train_multi_loss + l2_reg * regularization
train_accuracy = accuracy(predictions[:, :num_class], y)
train_kappa = quad_kappa(predictions[:, :num_class], y)
valid_predictions = nn.layers.get_output(output_layer, deterministic=True)
valid_log_loss, valid_reg_loss, valid_multi_loss = multi_task_loss(
valid_predictions, y)
valid_accuracy = accuracy(valid_predictions[:, :num_class], y)
valid_kappa = quad_kappa(valid_predictions[:, :num_class], y)
# Scale grads
all_params = nn.layers.get_all_params(output_layer, trainable=True)
all_grads = T.grad(train_loss, all_params)
#scaled_grads = nn.updates.total_norm_constraint(all_grads, max_norm=5, return_norm=False)
def GESD (sum_uni_l, sum_uni_r):
eucli=1/(1+T.sum((sum_uni_l-sum_uni_r)**2))
kernel=1/(1+T.exp(-(T.dot(sum_uni_l,sum_uni_r.T)+1)))
return (eucli*kernel).reshape((1,1))
#theano#################################################################################################################
#check forward
fo = theano.function([X, W_x, W_h, B, hid], o)
print"x=", v_x
print"w_x=",v_w_x
print"w_h=", v_w_h
print"b=", v_b
print"b_mkl=", v_b_mkl
print"hid=",v_hid
print"o_real=",v_o_real
v_o = fo(v_x, v_w_x, v_w_h, v_b, v_hid)
#print "forward o=",v_o
#check gradients
loss = -T.sum(o * T.log(o_real))
gx = T.grad(loss, X)
fx = theano.function([X, W_x, W_h, B, hid, o_real], gx)
#theano.printing.pydotprint(fx, outfile='rnn_dx.png', var_with_name_simple=True)
gradients_x = fx(v_x, v_w_x, v_w_h, v_b, v_hid, v_o_real)
print "gradients_x=", gradients_x
#mkl#################################################################################################################
O = mkl_simplernn_bw_op.SimpleRNN_bw()(X, W_x, W_h, B_mkl, hid, o_real)
fx_mkl = theano.function([X, W_x, W_h, B_mkl, hid, o_real], O)
gradients_x_mkl = fx_mkl(v_x, v_w_x, v_w_h, v_b_mkl, v_hid, v_o_real)
theano.printing.pydotprint(fx_mkl, outfile='rnn_dx.png', var_with_name_simple=True)
print "gradients_x_mkl=", gradients_x_mkl
def evaluate_lenet5(learning_rate=0.008, n_epochs=2000, nkerns=[400], batch_size=1, window_width=3,
maxSentLength=30, emb_size=300, hidden_size=[300,10],
margin=0.5, L2_weight=0.0001, Div_reg=0.0001, norm_threshold=5.0, use_svm=False):
model_options = locals().copy()
print "model options", model_options
rootPath='/mounts/data/proj/wenpeng/Dataset/MicrosoftParaphrase/tokenized_msr/';
rng = numpy.random.RandomState(23455)
datasets, word2id=load_msr_corpus_20161229(rootPath+'tokenized_train.txt', rootPath+'tokenized_test.txt', maxSentLength)
vocab_size=len(word2id)+1
mtPath='/mounts/data/proj/wenpeng/Dataset/paraphraseMT/'
mt_train, mt_test=load_mts(mtPath+'concate_15mt_train.txt', mtPath+'concate_15mt_test.txt')
wm_train, wm_test=load_wmf_wikiQA(rootPath+'train_number_matching_scores.txt', rootPath+'test_number_matching_scores.txt')
indices_train, trainY, trainLengths, normalized_train_length, trainLeftPad, trainRightPad= datasets[0]
indices_train_l=indices_train[::2]
indices_train_r=indices_train[1::2]
trainLengths_l=trainLengths[::2]
trainLengths_r=trainLengths[1::2]
normalized_train_length_l=normalized_train_length[::2]
normalized_train_length_r=normalized_train_length[1::2]
trainLeftPad_l=trainLeftPad[::2]
trainLeftPad_r=trainLeftPad[1::2]
trainRightPad_l=trainRightPad[::2]
trainRightPad_r=trainRightPad[1::2]
indices_test, testY, testLengths,normalized_test_length, testLeftPad, testRightPad= datasets[1]
indices_test_l=indices_test[::2]
indices_test_r=indices_test[1::2]
testLengths_l=testLengths[::2]
testLengths_r=testLengths[1::2]
normalized_test_length_l=normalized_test_length[::2]
normalized_test_length_r=normalized_test_length[1::2]
testLeftPad_l=testLeftPad[::2]
testLeftPad_r=testLeftPad[1::2]
testRightPad_l=testRightPad[::2]
testRightPad_r=testRightPad[1::2]
train_size = len(indices_train_l)
test_size = len(indices_test_l)
train_batch_start=range(train_size)
test_batch_start=range(test_size)
# indices_train_l=theano.shared(numpy.asarray(indices_train_l, dtype=theano.config.floatX), borrow=True)
# indices_train_r=theano.shared(numpy.asarray(indices_train_r, dtype=theano.config.floatX), borrow=True)
# indices_test_l=theano.shared(numpy.asarray(indices_test_l, dtype=theano.config.floatX), borrow=True)
# indices_test_r=theano.shared(numpy.asarray(indices_test_r, dtype=theano.config.floatX), borrow=True)
# indices_train_l=T.cast(indices_train_l, 'int32')
# indices_train_r=T.cast(indices_train_r, 'int32')
# indices_test_l=T.cast(indices_test_l, 'int32')
# indices_test_r=T.cast(indices_test_r, 'int32')
rand_values=random_value_normal((vocab_size, emb_size), theano.config.floatX, rng)
# rand_values[0]=numpy.array(numpy.zeros(emb_size))
id2word = {y:x for x,y in word2id.iteritems()}
word2vec=load_word2vec()
rand_values=load_word2vec_to_init_new(rand_values, id2word, word2vec)
embeddings=theano.shared(value=numpy.array(rand_values,dtype=theano.config.floatX), borrow=True)#theano.shared(value=rand_values, borrow=True)
# allocate symbolic variables for the data
# index = T.iscalar()
x_index_l = T.imatrix() # now, x is the index matrix, must be integer
x_index_r = T.imatrix()
y = T.ivector()
left_l=T.iscalar()
right_l=T.iscalar()
left_r=T.iscalar()
right_r=T.iscalar()
length_l=T.iscalar()
length_r=T.iscalar()
norm_length_l=T.fscalar()
norm_length_r=T.fscalar()
mts=T.fmatrix()
wmf=T.fmatrix()
# cost_tmp=T.fscalar()
#x=embeddings[x_index.flatten()].reshape(((batch_size*4),maxSentLength, emb_size)).transpose(0, 2, 1).flatten()
ishape = (emb_size, maxSentLength) # this is the size of MNIST images
filter_size=(emb_size,window_width)
#poolsize1=(1, ishape[1]-filter_size[1]+1) #?????????????????????????????
length_after_wideConv=ishape[1]+filter_size[1]-1
######################
# BUILD ACTUAL MODEL #
######################
print '... building the model'
# Reshape matrix of rasterized images of shape (batch_size,28*28)
# to a 4D tensor, compatible with our LeNetConvPoolLayer
#layer0_input = x.reshape(((batch_size*4), 1, ishape[0], ishape[1]))
layer0_l_input = embeddings[x_index_l.flatten()].reshape((batch_size,maxSentLength, emb_size)).dimshuffle(0, 'x', 2,1)
layer0_r_input = embeddings[x_index_r.flatten()].reshape((batch_size,maxSentLength, emb_size)).dimshuffle(0, 'x', 2,1)
conv_W, conv_b=create_conv_para(rng, filter_shape=(nkerns[0], 1, filter_size[0], filter_size[1]))
conv_W_into_matrix=conv_W.reshape((conv_W.shape[0], conv_W.shape[2]*conv_W.shape[3]))
#layer0_output = debug_print(layer0.output, 'layer0.output')
layer0_l = Conv_with_input_para(rng, input=layer0_l_input,
image_shape=(batch_size, 1, ishape[0], ishape[1]),
filter_shape=(nkerns[0], 1, filter_size[0], filter_size[1]), W=conv_W, b=conv_b)
layer0_r = Conv_with_input_para(rng, input=layer0_r_input,
image_shape=(batch_size, 1, ishape[0], ishape[1]),
filter_shape=(nkerns[0], 1, filter_size[0], filter_size[1]), W=conv_W, b=conv_b)
layer0_l_output=debug_print(layer0_l.output, 'layer0_l.output')
layer0_r_output=debug_print(layer0_r.output, 'layer0_r.output')
layer0_l_output_maxpool = T.max(layer0_l.output_narrow_conv_out[:,:,:,left_l:], axis=3).reshape((1, nkerns[0]))
layer0_r_output_maxpool = T.max(layer0_r.output_narrow_conv_out[:,:,:,left_r:], axis=3).reshape((1, nkerns[0]))
layer1=Average_Pooling_for_Top(rng, input_l=layer0_l_output, input_r=layer0_r_output, kern=nkerns[0],
left_l=left_l, right_l=right_l, left_r=left_r, right_r=right_r,
length_l=length_l+filter_size[1]-1, length_r=length_r+filter_size[1]-1,
dim=maxSentLength+filter_size[1]-1)
sum_uni_l=T.sum(layer0_l_input[:,:,:,left_l:], axis=3).reshape((1, emb_size))
norm_uni_l=sum_uni_l/T.sqrt((sum_uni_l**2).sum())
sum_uni_r=T.sum(layer0_r_input[:,:,:,left_r:], axis=3).reshape((1, emb_size))
norm_uni_r=sum_uni_r/T.sqrt((sum_uni_r**2).sum())
uni_cosine=cosine(sum_uni_l, sum_uni_r)
'''
linear=Linear(sum_uni_l, sum_uni_r)
poly=Poly(sum_uni_l, sum_uni_r)
sigmoid=Sigmoid(sum_uni_l, sum_uni_r)
rbf=RBF(sum_uni_l, sum_uni_r)
gesd=GESD(sum_uni_l, sum_uni_r)
'''
eucli_1=1.0/(1.0+EUCLID(sum_uni_l, sum_uni_r))#25.2%
#eucli_1=EUCLID(sum_uni_l, sum_uni_r)
len_l=norm_length_l.reshape((1,1))
len_r=norm_length_r.reshape((1,1))
'''
len_l=length_l.reshape((1,1))
len_r=length_r.reshape((1,1))
'''
#length_gap=T.log(1+(T.sqrt((len_l-len_r)**2))).reshape((1,1))
#length_gap=T.sqrt((len_l-len_r)**2)
#layer3_input=mts
HL_layer_1_input=T.concatenate([
# mts,
eucli_1, #uni_cosine,norm_uni_l-(norm_uni_l+norm_uni_r)/2,#uni_cosine, #
uni_cosine,
# sum_uni_l,
# sum_uni_r,
# sum_uni_l+sum_uni_r,
1.0/(1.0+EUCLID(layer0_l_output_maxpool, layer0_r_output_maxpool)),
cosine(layer0_l_output_maxpool, layer0_r_output_maxpool),
layer0_l_output_maxpool,
layer0_r_output_maxpool,
T.sqrt((layer0_l_output_maxpool-layer0_r_output_maxpool)**2+1e-10),
layer1.output_eucli_to_simi, #layer1.output_cosine,layer1.output_vector_l-(layer1.output_vector_l+layer1.output_vector_r)/2,#layer1.output_cosine, #
layer1.output_cosine,
layer1.output_vector_l,
layer1.output_vector_r,
T.sqrt((layer1.output_vector_l-layer1.output_vector_r)**2+1e-10),
# len_l, len_r
layer1.output_attentions
# wmf,
], axis=1)#, layer2.output, layer1.output_cosine], axis=1)
HL_layer_1_input_with_extra=T.concatenate([#HL_layer_1_input,
mts, len_l, len_r
# wmf
], axis=1)#, layer2.output, layer1.output_cosine], axis=1)
HL_layer_1_input_size=1+1+ 1+1+3* nkerns[0] +1+1+3*nkerns[0]+10*10
HL_layer_1_input_with_extra_size = HL_layer_1_input_size+15+2
HL_layer_1=HiddenLayer(rng, input=HL_layer_1_input, n_in=HL_layer_1_input_size, n_out=hidden_size[0], activation=T.tanh)
HL_layer_2=HiddenLayer(rng, input=HL_layer_1.output, n_in=hidden_size[0], n_out=hidden_size[1], activation=T.tanh)
LR_layer_input=T.concatenate([HL_layer_2.output, HL_layer_1.output, HL_layer_1_input],axis=1)
LR_layer_input_with_extra=T.concatenate([HL_layer_2.output, HL_layer_1_input_with_extra],axis=1)#HL_layer_1.output,
LR_layer=LogisticRegression(rng, input=LR_layer_input, n_in=HL_layer_1_input_size+hidden_size[0]+hidden_size[1], n_out=2)
# LR_layer_input=HL_layer_2.output
# LR_layer=LogisticRegression(rng, input=LR_layer_input, n_in=hidden_size, n_out=2)
# layer3=LogisticRegression(rng, input=layer3_input, n_in=15+1+1+2+3, n_out=2)
#L2_reg =(layer3.W** 2).sum()+(layer2.W** 2).sum()+(layer1.W** 2).sum()+(conv_W** 2).sum()
L2_reg =debug_print((LR_layer.W** 2).sum()+(HL_layer_2.W** 2).sum()+(HL_layer_1.W** 2).sum()+(conv_W** 2).sum(), 'L2_reg')#+(layer1.W** 2).sum()
# diversify_reg= Diversify_Reg(LR_layer.W.T)+Diversify_Reg(HL_layer_2.W.T)+Diversify_Reg(HL_layer_1.W.T)+Diversify_Reg(conv_W_into_matrix)
cost_this =debug_print(LR_layer.negative_log_likelihood(y), 'cost_this')#+L2_weight*L2_reg
cost=cost_this+L2_weight*L2_reg#+Div_reg*diversify_reg
test_model = theano.function([x_index_l,x_index_r,y,left_l, right_l, left_r, right_r, length_l, length_r, norm_length_l, norm_length_r,
mts,wmf], [LR_layer.errors(y), LR_layer.y_pred, LR_layer_input_with_extra, y], on_unused_input='ignore',allow_input_downcast=True)
params = LR_layer.params+ HL_layer_2.params+HL_layer_1.params+[conv_W, conv_b]+[embeddings]#+[embeddings]# + layer1.params
accumulator=[]
for para_i in params:
eps_p=numpy.zeros_like(para_i.get_value(borrow=True),dtype=theano.config.floatX)
accumulator.append(theano.shared(eps_p, borrow=True))
# create a list of gradients for all model parameters
grads = T.grad(cost, params)
updates = []
for param_i, grad_i, acc_i in zip(params, grads, accumulator):
clipped_grad = T.clip(grad_i, -0.5, 0.5)
acc = acc_i + T.sqr(clipped_grad)
updates.append((param_i, param_i - learning_rate * clipped_grad / T.sqrt(acc+1e-10))) #AdaGrad
updates.append((acc_i, acc))
train_model = theano.function([x_index_l,x_index_r,y,left_l, right_l, left_r, right_r, length_l, length_r, norm_length_l, norm_length_r,
mts,wmf], [cost,LR_layer.errors(y)], updates=updates, on_unused_input='ignore',allow_input_downcast=True)
train_model_predict = theano.function([x_index_l,x_index_r,y,left_l, right_l, left_r, right_r, length_l, length_r, norm_length_l, norm_length_r,
mts,wmf], [cost_this,LR_layer.errors(y), LR_layer_input_with_extra, y],on_unused_input='ignore',allow_input_downcast=True)
###############
# TRAIN MODEL #
###############
print '... training'
# early-stopping parameters
patience = 500000000000000 # look as this many examples regardless
patience_increase = 2 # wait this much longer when a new best is
# found
improvement_threshold = 0.995 # a relative improvement of this much is
best_params = None
best_validation_loss = numpy.inf
test_score = 0.
start_time = time.clock()
epoch = 0
done_looping = False
max_acc=0.0
nn_max_acc=0.0
best_iter=0
cost_tmp=0.0
while (epoch < n_epochs) and (not done_looping):
epoch = epoch + 1
#for minibatch_index in xrange(n_train_batches): # each batch
minibatch_index=0
shuffle(train_batch_start)#shuffle training data
for index in train_batch_start:
# iter means how many batches have been runed, taking into loop
iter = (epoch - 1) * train_size + minibatch_index +1
minibatch_index=minibatch_index+1
# if iter%update_freq != 0:
# cost_ij, error_ij, layer3_input, y=train_model_predict(batch_start)
# #print 'cost_ij: ', cost_ij
# cost_tmp+=cost_ij
# error_sum+=error_ij
# else:
cost_i, error_i= train_model(indices_train_l[index: index + batch_size],
indices_train_r[index: index + batch_size],
trainY[index: index + batch_size],
trainLeftPad_l[index],
trainRightPad_l[index],
trainLeftPad_r[index],
trainRightPad_r[index],
trainLengths_l[index],
trainLengths_r[index],
normalized_train_length_l[index],
normalized_train_length_r[index],
mt_train[index: index + batch_size],
wm_train[index: index + batch_size])
cost_tmp+=cost_i
if iter < 6000 and iter %100 ==0:
print 'training @ iter = '+str(iter)+' average cost: '+str(cost_tmp/iter)
if iter >= 6000 and iter % 100 == 0:
# if iter%100 ==0:
print 'training @ iter = '+str(iter)+' average cost: '+str(cost_tmp/iter)
test_losses=[]
test_y=[]
test_features=[]
for index in test_batch_start:
test_loss, pred_y, layer3_input, y=test_model(indices_test_l[index: index + batch_size],
indices_test_r[index: index + batch_size],
testY[index: index + batch_size],
testLeftPad_l[index],
testRightPad_l[index],
testLeftPad_r[index],
testRightPad_r[index],
testLengths_l[index],
testLengths_r[index],
normalized_test_length_l[index],
normalized_test_length_r[index],
mt_test[index: index + batch_size],
wm_test[index: index + batch_size])
#test_losses = [test_model(i) for i in test_batch_start]
test_losses.append(test_loss)
test_y.append(y[0])
test_features.append(layer3_input[0])
#write_file.write(str(pred_y[0])+'\n')#+'\t'+str(testY[i].eval())+
#write_file.close()
test_score = numpy.mean(test_losses)
test_acc = (1-test_score) * 100.
if test_acc > nn_max_acc:
nn_max_acc = test_acc
print '\t\t\tepoch:', epoch, 'iter:', iter, 'current acc:', test_acc, 'nn_max_acc:', nn_max_acc
#now, see the results of svm
if use_svm:
train_y=[]
train_features=[]
for index in train_batch_start:
cost_ij, error_ij, layer3_input, y=train_model_predict(indices_train_l[index: index + batch_size],
indices_train_r[index: index + batch_size],
trainY[index: index + batch_size],
trainLeftPad_l[index],
trainRightPad_l[index],
trainLeftPad_r[index],
trainRightPad_r[index],
trainLengths_l[index],
trainLengths_r[index],
normalized_train_length_l[index],
normalized_train_length_r[index],
mt_train[index: index + batch_size],
wm_train[index: index + batch_size])
train_y.append(y[0])
train_features.append(layer3_input[0])
#write_feature.write(' '.join(map(str,layer3_input[0]))+'\n')
#write_feature.close()
clf = svm.SVC(kernel='linear')#OneVsRestClassifier(LinearSVC()) #linear 76.11%, poly 75.19, sigmoid 66.50, rbf 73.33
clf.fit(train_features, train_y)
results=clf.predict(test_features)
lr=LinearRegression().fit(train_features, train_y)
results_lr=lr.predict(test_features)
corr_count=0
corr_lr=0
test_size=len(test_y)
for i in range(test_size):
if results[i]==test_y[i]:
corr_count+=1
if numpy.absolute(results_lr[i]-test_y[i])<0.5:
corr_lr+=1
acc=corr_count*1.0/test_size
acc_lr=corr_lr*1.0/test_size
if acc > max_acc:
max_acc=acc
best_iter=iter
if acc_lr> max_acc:
max_acc=acc_lr
best_iter=iter
print '\t\t\t\tsvm acc: ', acc, 'LR acc: ', acc_lr, ' max acc: ', max_acc , ' at iter: ', best_iter
if patience <= iter:
done_looping = True
break
end_time = time.clock()
print('Optimization complete.')
print('Best validation score of %f %% obtained at iteration %i,'\
'with test performance %f %%' %
(best_validation_loss * 100., best_iter + 1, test_score * 100.))
print >> sys.stderr, ('The code for file ' +
os.path.split(__file__)[1] +
' ran for %.2fm' % ((end_time - start_time) / 60.))
def log_softmax(x):
x_diff = x - x.max(1, keepdims=True)
return x_diff - T.log(T.sum(T.exp(x_diff), axis=1, keepdims=True))
def __init__(self, **option):
# source and target embedding dim
sedim, tedim = option["embdim"]
# source, target and attention hidden dim
shdim, thdim, ahdim, domaindim, feadim = option["hidden"]
# maxout hidden dim
maxdim = option["maxhid"]
# maxout part
maxpart = option["maxpart"]
# deepout hidden dim
deephid = option["deephid"]
svocab, tvocab = option["vocabulary"]
sw2id, sid2w = svocab
tw2id, tid2w = tvocab
# source and target vocabulary size
svsize, tvsize = len(sid2w), len(tid2w)
dnum = option['dnum']
if "scope" not in option or option["scope"] is None:
option["scope"] = "rnnsearch"
if "initializer" not in option:
option["initializer"] = None
if "regularizer" not in option:
option["regularizer"] = None
if "keep_prob" not in option:
option["keep_prob"] = 1.0
dtype = theano.config.floatX
initializer = option["initializer"]
regularizer = option["regularizer"]
keep_prob = option["keep_prob"] or 1.0
scope = option["scope"]
decoder_scope = "decoder"
encoder = Encoder(sedim, shdim)
decoderType = eval("Decoder{}".format(option["decoder"]))
decoder = decoderType(tedim,
thdim,
ahdim,
2 * shdim,
dnum=dnum,
dim_maxout=maxdim,
max_part=maxpart,
dim_readout=deephid,
dim_domain=domaindim,
feadim=feadim,
n_y_vocab=tvsize)
# training graph
with ops.variable_scope(scope,
initializer=initializer,
regularizer=regularizer,
dtype=dtype):
src_seq = T.imatrix("source_sequence")
src_mask = T.matrix("source_sequence_mask")
tgt_seq = T.imatrix("target_sequence")
tgt_mask = T.matrix("target_sequence_mask")
tag_seq = T.imatrix("domain_tag")
# nsrc_mask = T.set_subtensor(src_mask[T.cast(T.sum(src_mask, 0) - 1, 'int32'),
# T.arange(src_mask.shape[1])], 0.0)
with ops.variable_scope("source_embedding"):
source_embedding = ops.get_variable("embedding",
[svsize, sedim])
source_bias = ops.get_variable("bias", [sedim])
with ops.variable_scope("target_embedding") as tgtembscope:
target_embedding = ops.get_variable("embedding",
[tvsize, tedim])
# target_bias = ops.get_variable("bias", [tedim])
decoder.tiescope = tgtembscope
source_inputs = nn.embedding_lookup(source_embedding, src_seq)
target_inputs = nn.embedding_lookup(target_embedding, tgt_seq)
source_inputs = source_inputs + source_bias
if keep_prob < 1.0:
source_inputs = nn.dropout(source_inputs, keep_prob=keep_prob)
target_inputs = nn.dropout(target_inputs, keep_prob=keep_prob)
states, r_states = encoder.forward(source_inputs, src_mask)
annotation = T.concatenate([states, r_states], 2)
with ops.variable_scope("Specific"):
domain_alpha = domain_sensitive_attention(
annotation, src_mask, shdim * 2, domaindim)
# domain_alpha = attention(r_states[0], annotation, nsrc_mask,
# shdim,
# shdim * 2)
domain_context = T.sum(annotation * domain_alpha[:, :, None],
0)
dfeature = nn.feedforward(domain_context, [shdim * 2, feadim],
True,
activation=T.tanh,
scope="feature1")
dscores = nn.feedforward(dfeature, [feadim, dnum],
True,
activation=T.tanh,
scope="score")
# (batch, 2)
dprobs = T.nnet.softmax(dscores)
dpred_tag = T.argmax(dprobs, 1)
didx = T.arange(tag_seq.flatten().shape[0])
dce = -T.log(dprobs[didx, tag_seq.flatten()])
dcost = T.mean(dce)
share_alpha = domain_sensitive_attention(annotation, src_mask,
shdim * 2, domaindim)
# share_alpha = attention(r_states[0], annotation, nsrc_mask,
# shdim,
# shdim * 2)
share_context = T.sum(annotation * share_alpha[:, :, None], 0)
sfeature = nn.feedforward(share_context, [shdim * 2, feadim],
True,
activation=T.tanh,
scope="feature1")
with ops.variable_scope("Shared"):
sscores = nn.feedforward(sfeature, [feadim, dnum],
True,
activation=T.tanh,
scope="score")
# (batch, 2)
sprobs = T.nnet.softmax(sscores)
spred_tag = T.argmax(sprobs, 1)
sidx = T.arange(tag_seq.flatten().shape[0])
sce = -T.log(sprobs[sidx, tag_seq.flatten()])
scost = T.mean(sce)
adv_sce = -sprobs[sidx, tag_seq.flatten()] * T.log(
sprobs[sidx, tag_seq.flatten()])
adv_scost = T.mean(adv_sce)
domain_gate = nn.feedforward([dfeature, annotation],
[[feadim, shdim * 2], shdim * 2],
True,
scope="domain_gate")
domain_annotation = annotation * domain_gate
domain_annotation = nn.dropout(domain_annotation,
keep_prob=keep_prob)
share_gate = nn.feedforward([sfeature, annotation],
[[feadim, shdim * 2], shdim * 2],
True,
scope="share_gate")
annotation = annotation * share_gate
annotation = nn.dropout(annotation, keep_prob=keep_prob)
# compute initial state for decoder
# first state of backward encoder
# batch * shdim
final_state = T.concatenate([
annotation[0, :, annotation.shape[-1] / 2:],
domain_annotation[0, :, annotation.shape[-1] / 2:]
], -1)
with ops.variable_scope(decoder_scope):
initial_state = nn.feedforward(final_state, [shdim * 2, thdim],
True,
scope="initial",
activation=T.tanh)
# keys for query
mapped_keys = map_key(annotation, 2 * shdim, ahdim, "semantic")
mapped_domain_keys = map_key(domain_annotation, 2 * shdim,
ahdim, "domain")
_, _, cost, tgtdcost, tpred_tag, _ = decoder.forward(
tgt_seq, target_inputs, tgt_mask, mapped_keys, src_mask,
annotation, initial_state, mapped_domain_keys,
domain_annotation, tag_seq, keep_prob)
lamb = theano.shared(numpy.asarray(option["lambda"], dtype), "lambda")
# cwscost *= lamb
final_cost = cost + dcost + tgtdcost - lamb * adv_scost
tag_inputs = [src_seq, src_mask]
tag_outputs = [dpred_tag, spred_tag]
tag_predict = theano.function(tag_inputs, tag_outputs)
self.tag_predict = tag_predict
tgt_tag_inputs = [src_seq, src_mask, tgt_seq, tgt_mask]
tgt_tag_outputs = [tpred_tag]
tgt_tag_predict = theano.function(tgt_tag_inputs, tgt_tag_outputs)
self.tgt_tag_predict = tgt_tag_predict
training_inputs = [src_seq, src_mask, tgt_seq, tgt_mask, tag_seq]
training_outputs = [cost, dcost, adv_scost, tgtdcost]
self.cost_cla = scost
self.inputs_cla = [src_seq, src_mask, tag_seq]
self.outputs_cla = [scost]
# decoding graph
with ops.variable_scope(scope, reuse=True):
prev_words = T.ivector("prev_words")
# disable dropout
source_inputs = nn.embedding_lookup(source_embedding, src_seq)
source_inputs = source_inputs + source_bias
states, r_states = encoder.forward(source_inputs, src_mask)
annotation = T.concatenate([states, r_states], 2)
with ops.variable_scope("Specific"):
domain_alpha = domain_sensitive_attention(
annotation, src_mask, shdim * 2, domaindim)
# domain_alpha = attention(r_states[0], annotation, nsrc_mask,
# shdim,
# shdim * 2)
domain_context = T.sum(annotation * domain_alpha[:, :, None],
0)
dfeature = nn.feedforward(domain_context, [shdim * 2, feadim],
True,
activation=T.tanh,
scope="feature1")
share_alpha = domain_sensitive_attention(annotation, src_mask,
shdim * 2, domaindim)
# share_alpha = attention(r_states[0], annotation, nsrc_mask,
# shdim,
# shdim * 2)
share_context = T.sum(annotation * share_alpha[:, :, None], 0)
sfeature = nn.feedforward(share_context, [shdim * 2, feadim],
True,
activation=T.tanh,
scope="feature1")
domain_gate = nn.feedforward([dfeature, annotation],
[[feadim, shdim * 2], shdim * 2],
True,
scope="domain_gate")
domain_annotation = annotation * domain_gate
share_gate = nn.feedforward([sfeature, annotation],
[[feadim, shdim * 2], shdim * 2],
True,
scope="share_gate")
annotation = annotation * share_gate
# decoder
final_state = T.concatenate([
annotation[0, :, annotation.shape[-1] / 2:],
domain_annotation[0, :, annotation.shape[-1] / 2:]
], -1)
with ops.variable_scope(decoder_scope):
initial_state = nn.feedforward(final_state, [shdim * 2, thdim],
True,
scope="initial",
activation=T.tanh)
mapped_keys = map_key(annotation, 2 * shdim, ahdim, "semantic")
mapped_domain_keys = map_key(domain_annotation, 2 * shdim,
ahdim, "domain")
prev_inputs = nn.embedding_lookup(target_embedding, prev_words)
# prev_inputs = prev_inputs + target_bias
cond = T.neq(prev_words, 0)
# zeros out embedding if y is 0, which indicates <s>
prev_inputs = prev_inputs * cond[:, None]
with ops.variable_scope(decoder_scope):
mask = T.ones_like(prev_words, dtype=dtype)
next_state, context = decoder.step(prev_inputs, mask,
initial_state, mapped_keys,
annotation, src_mask,
mapped_domain_keys,
domain_annotation)
if option["decoder"] == "GruSimple":
probs = decoder.prediction(prev_inputs, initial_state,
context)
elif option["decoder"] == "GruCond":
probs = decoder.prediction(prev_inputs, next_state,
context)
# encoding
encoding_inputs = [src_seq, src_mask]
encoding_outputs = [
annotation, initial_state, mapped_keys, mapped_domain_keys,
domain_annotation
]
encode = theano.function(encoding_inputs, encoding_outputs)
if option["decoder"] == "GruSimple":
prediction_inputs = [
prev_words, initial_state, annotation, mapped_keys, src_mask
]
prediction_outputs = [probs, context]
predict = theano.function(prediction_inputs, prediction_outputs)
generation_inputs = [prev_words, initial_state, context]
generation_outputs = next_state
generate = theano.function(generation_inputs, generation_outputs)
self.predict = predict
self.generate = generate
elif option["decoder"] == "GruCond":
prediction_inputs = [
prev_words, initial_state, annotation, mapped_keys, src_mask,
mapped_domain_keys, domain_annotation
]
prediction_outputs = [probs, next_state]
predict = theano.function(prediction_inputs, prediction_outputs)
self.predict = predict
self.cost = final_cost
self.inputs = training_inputs
self.outputs = training_outputs
self.updates = []
# self.align = align
# self.sample = sample
self.encode = encode
# self.get_snt_cost = get_snt_cost
self.option = option
def RBF(sum_uni_l, sum_uni_r):
eucli=T.sum((sum_uni_l-sum_uni_r)**2)
return T.exp(-0.5*eucli).reshape((1,1))
def get_error(self, input):
L = 0.5 * T.sum(T.sqr(self.a_test - input), axis=1)
return T.mean(L)
def training(self, fea2obj, batch_size, learning_rate=0.005, steprule='adagrad', wait_epochs=5, kl_weight_init=None, klw_ep=50, klw_inc_rate=0, num_epochs=None):
networkfile = self._config['net']
n_epochs = num_epochs or int(self._config['nepochs'])
reg_weight=float(self._config['loss_weight'])
reg_type=self._config['loss_reg']
numtrain = int(self._config['num_train']) if 'num_train' in self._config else None
train_stream, num_samples_train = get_comb_stream(fea2obj, 'train', batch_size, shuffle=True, num_examples=numtrain)
dev_stream, num_samples_dev = get_comb_stream(fea2obj, 'dev', batch_size=None, shuffle=False)
logger.info('sources: %s -- number of train/dev samples: %d/%d', train_stream.sources, num_samples_train, num_samples_dev)
t2idx = fea2obj['targets'].t2idx
klw_init = kl_weight_init or float(self._config['kld_weight']) if 'kld_weight' in self._config else 1
logger.info('kl_weight_init: %d', klw_init)
kl_weight = shared_floatx(klw_init, 'kl_weight')
entropy_weight = shared_floatx(1., 'entropy_weight')
cost, p_at_1, _, KLD, logpy_xz, pat1_recog, misclassify_rate= build_model_new(fea2obj, len(t2idx), self._config, kl_weight, entropy_weight)
cg = ComputationGraph(cost)
weights = VariableFilter(roles=[WEIGHT])(cg.parameters)
logger.info('Model weights are: %s', weights)
if 'L2' in reg_type:
cost += reg_weight * l2_norm(weights)
logger.info('applying %s with weight: %f ', reg_type, reg_weight)
dropout = -0.1
if dropout > 0:
cg = apply_dropout(cg, weights, dropout)
cost = cg.outputs[0]
cost.name = 'cost'
logger.info('Our Algorithm is : %s, and learning_rate: %f', steprule, learning_rate)
if 'adagrad' in steprule:
cnf_step_rule = AdaGrad(learning_rate)
elif 'adadelta' in steprule:
cnf_step_rule = AdaDelta(decay_rate=0.95)
elif 'decay' in steprule:
cnf_step_rule = RMSProp(learning_rate=learning_rate, decay_rate=0.90)
cnf_step_rule = CompositeRule([cnf_step_rule, StepClipping(1)])
elif 'momentum' in steprule:
cnf_step_rule = Momentum(learning_rate=learning_rate, momentum=0.9)
elif 'adam' in steprule:
cnf_step_rule = Adam(learning_rate=learning_rate)
else:
logger.info('The steprule param is wrong! which is: %s', steprule)
algorithm = GradientDescent(cost=cost, parameters=cg.parameters, step_rule=cnf_step_rule, on_unused_sources='warn')
#algorithm.add_updates(updates)
gradient_norm = aggregation.mean(algorithm.total_gradient_norm)
step_norm = aggregation.mean(algorithm.total_step_norm)
monitored_vars = [cost, gradient_norm, step_norm, p_at_1, KLD, logpy_xz, kl_weight, pat1_recog]
train_monitor = TrainingDataMonitoring(variables=monitored_vars, after_batch=True,
before_first_epoch=True, prefix='tra')
dev_monitor = DataStreamMonitoring(variables=[cost, p_at_1, KLD, logpy_xz, pat1_recog, misclassify_rate], after_epoch=True,
before_first_epoch=True, data_stream=dev_stream, prefix="dev")
extensions = [dev_monitor, train_monitor, Timing(),
TrackTheBest('dev_cost'),
FinishIfNoImprovementAfter('dev_cost_best_so_far', epochs=wait_epochs),
Printing(after_batch=False), #, ProgressBar()
FinishAfter(after_n_epochs=n_epochs),
saveload.Load(networkfile+'.toload.pkl'),
] + track_best('dev_cost', networkfile+ '.best.pkl')
#extensions.append(SharedVariableModifier(kl_weight,
# lambda n, klw: numpy.cast[theano.config.floatX] (klw_inc_rate + klw), after_epoch=False, every_n_epochs=klw_ep, after_batch=False))
# extensions.append(SharedVariableModifier(entropy_weight,
# lambda n, crw: numpy.cast[theano.config.floatX](crw - klw_inc_rate), after_epoch=False, every_n_epochs=klw_ep, after_batch=False))
logger.info('number of parameters in the model: %d', tensor.sum([p.size for p in cg.parameters]).eval())
logger.info('Lookup table sizes: %s', [p.size.eval() for p in cg.parameters if 'lt' in p.name])
main_loop = MainLoop(data_stream=train_stream, algorithm=algorithm,
model=Model(cost), extensions=extensions)
main_loop.run()
def Hx_plain():
Hx_plain_splits = TT.grad(TT.sum(
[TT.sum(g * x) for g, x in zip(constraint_grads, xs)]),
wrt=params,
disconnected_inputs='warn')
return TT.concatenate([TT.flatten(s) for s in Hx_plain_splits])
def log_softmax(x):
xdev = x - x.max(1, keepdims=True)
return xdev - T.log(T.sum(T.exp(xdev), axis=1, keepdims=True))
def find_threshold(images):
result, updates = th.scan(fn=lambda i: find_val(i),
outputs_info=None,
sequences=images)
return T.sum(result) / images.shape[0]
def evaluate_lenet5(learning_rate=0.01,
n_epochs=100,
emb_size=40,
batch_size=50,
describ_max_len=20,
type_size=12,
filter_size=[3, 5],
maxSentLen=100,
hidden_size=[300, 300]):
model_options = locals().copy()
print "model options", model_options
emb_root = '/save/wenpeng/datasets/LORELEI/multi-lingual-emb/'
seed = 1234
np.random.seed(seed)
rng = np.random.RandomState(
seed) #random seed, control the model generates the same results
srng = T.shared_randomstreams.RandomStreams(rng.randint(seed))
all_sentences, all_masks, all_labels, word2id = load_BBN_multi_labels_dataset(
maxlen=maxSentLen
) #minlen, include one label, at least one word in the sentence
label_sent, label_mask = load_SF_type_descriptions(word2id, type_size,
describ_max_len)
label_sent = np.asarray(label_sent, dtype='int32')
label_mask = np.asarray(label_mask, dtype=theano.config.floatX)
train_sents = np.asarray(all_sentences[0], dtype='int32')
train_masks = np.asarray(all_masks[0], dtype=theano.config.floatX)
train_labels = np.asarray(all_labels[0], dtype='int32')
train_size = len(train_labels)
dev_sents = np.asarray(all_sentences[1], dtype='int32')
dev_masks = np.asarray(all_masks[1], dtype=theano.config.floatX)
dev_labels = np.asarray(all_labels[1], dtype='int32')
dev_size = len(dev_labels)
'''
combine train and dev
'''
train_sents = np.concatenate([train_sents, dev_sents], axis=0)
train_masks = np.concatenate([train_masks, dev_masks], axis=0)
train_labels = np.concatenate([train_labels, dev_labels], axis=0)
train_size = train_size + dev_size
test_sents = np.asarray(all_sentences[2], dtype='int32')
test_masks = np.asarray(all_masks[2], dtype=theano.config.floatX)
test_labels = np.asarray(all_labels[2], dtype='int32')
test_size = len(test_labels)
vocab_size = len(word2id) + 1 # add one zero pad index
rand_values = rng.normal(
0.0, 0.01,
(vocab_size, emb_size)) #generate a matrix by Gaussian distribution
rand_values[0] = np.array(np.zeros(emb_size), dtype=theano.config.floatX)
id2word = {y: x for x, y in word2id.iteritems()}
word2vec = load_fasttext_multiple_word2vec_given_file([
emb_root + 'IL5-cca-wiki-lorelei-d40.eng.vec',
emb_root + 'IL5-cca-wiki-lorelei-d40.IL5.vec'
], 40)
rand_values = load_word2vec_to_init(rand_values, id2word, word2vec)
embeddings = theano.shared(
value=np.array(rand_values, dtype=theano.config.floatX), borrow=True
) #wrap up the python variable "rand_values" into theano variable
#now, start to build the input form of the model
sents_id_matrix = T.imatrix('sents_id_matrix')
sents_mask = T.fmatrix('sents_mask')
labels = T.imatrix('labels') #batch*12
des_id_matrix = T.imatrix()
des_mask = T.fmatrix()
######################
# BUILD ACTUAL MODEL #
######################
print '... building the model'
common_input = embeddings[sents_id_matrix.flatten()].reshape(
(batch_size, maxSentLen, emb_size)).dimshuffle(
0, 2, 1) #the input format can be adapted into CNN or GRU or LSTM
bow_emb = T.sum(common_input * sents_mask.dimshuffle(0, 'x', 1), axis=2)
repeat_common_input = T.repeat(
normalize_tensor3_colwise(common_input), type_size,
axis=0) #(batch_size*type_size, emb_size, maxsentlen)
des_input = embeddings[des_id_matrix.flatten()].reshape(
(type_size, describ_max_len, emb_size)).dimshuffle(0, 2, 1)
bow_des = T.sum(des_input * des_mask.dimshuffle(0, 'x', 1),
axis=2) #(tyope_size, emb_size)
repeat_des_input = T.tile(
normalize_tensor3_colwise(des_input),
(batch_size, 1, 1)) #(batch_size*type_size, emb_size, maxsentlen)
conv_W, conv_b = create_conv_para(rng,
filter_shape=(hidden_size[0], 1,
emb_size, filter_size[0]))
conv_W2, conv_b2 = create_conv_para(rng,
filter_shape=(hidden_size[0], 1,
emb_size,
filter_size[1]))
multiCNN_para = [conv_W, conv_b, conv_W2, conv_b2]
conv_att_W, conv_att_b = create_conv_para(rng,
filter_shape=(hidden_size[0], 1,
emb_size,
filter_size[0]))
conv_W_context, conv_b_context = create_conv_para(
rng, filter_shape=(hidden_size[0], 1, emb_size, 1))
conv_att_W2, conv_att_b2 = create_conv_para(rng,
filter_shape=(hidden_size[0],
1, emb_size,
filter_size[1]))
conv_W_context2, conv_b_context2 = create_conv_para(
rng, filter_shape=(hidden_size[0], 1, emb_size, 1))
ACNN_para = [
conv_att_W, conv_att_b, conv_W_context, conv_att_W2, conv_att_b2,
conv_W_context2
]
# NN_para = multiCNN_para+ACNN_para
conv_model = Conv_with_Mask(
rng,
input_tensor3=common_input,
mask_matrix=sents_mask,
image_shape=(batch_size, 1, emb_size, maxSentLen),
filter_shape=(hidden_size[0], 1, emb_size, filter_size[0]),
W=conv_W,
b=conv_b
) #mutiple mask with the conv_out to set the features by UNK to zero
sent_embeddings = conv_model.maxpool_vec #(batch_size, hidden_size) # each sentence then have an embedding of length hidden_size
conv_model2 = Conv_with_Mask(
rng,
input_tensor3=common_input,
mask_matrix=sents_mask,
image_shape=(batch_size, 1, emb_size, maxSentLen),
filter_shape=(hidden_size[0], 1, emb_size, filter_size[1]),
W=conv_W2,
b=conv_b2
) #mutiple mask with the conv_out to set the features by UNK to zero
sent_embeddings2 = conv_model2.maxpool_vec #(batch_size, hidden_size) # each sentence then have an embedding of length hidden_size
LR_input = T.concatenate([sent_embeddings, sent_embeddings2, bow_emb],
axis=1)
LR_input_size = hidden_size[0] * 2 + emb_size
#classification layer, it is just mapping from a feature vector of size "hidden_size" to a vector of only two values: positive, negative
U_a = create_ensemble_para(
rng, 12, LR_input_size) # the weight matrix hidden_size*2
LR_b = theano.shared(value=np.zeros((12, ), dtype=theano.config.floatX),
name='LR_b',
borrow=True) #bias for each target class
LR_para = [U_a, LR_b]
layer_LR = LogisticRegression(
rng, input=LR_input, n_in=LR_input_size, n_out=12, W=U_a, b=LR_b
) #basically it is a multiplication between weight matrix and input feature vector
score_matrix = T.nnet.sigmoid(layer_LR.before_softmax) #batch * 12
prob_pos = T.where(labels < 1, 1.0 - score_matrix, score_matrix)
loss = -T.mean(T.log(prob_pos))
'''
GRU
'''
U1, W1, b1 = create_GRU_para(rng, emb_size, hidden_size[0])
GRU_NN_para = [
U1, W1, b1
] #U1 includes 3 matrices, W1 also includes 3 matrices b1 is bias
# gru_input = common_input.dimshuffle((0,2,1)) #gru requires input (batch_size, emb_size, maxSentLen)
gru_layer = GRU_Batch_Tensor_Input_with_Mask(common_input, sents_mask,
hidden_size[0], U1, W1, b1)
gru_sent_embeddings = gru_layer.output_sent_rep # (batch_size, hidden_size)
LR_att_input = T.concatenate([gru_sent_embeddings, bow_emb], axis=1)
LR_att_input_size = hidden_size[0] + emb_size
#classification layer, it is just mapping from a feature vector of size "hidden_size" to a vector of only two values: positive, negative
U_att_a = create_ensemble_para(
rng, 12, LR_att_input_size) # the weight matrix hidden_size*2
LR_att_b = theano.shared(value=np.zeros((12, ),
dtype=theano.config.floatX),
name='LR_b',
borrow=True) #bias for each target class
LR_att_para = [U_att_a, LR_att_b]
layer_att_LR = LogisticRegression(
rng,
input=LR_att_input,
n_in=LR_att_input_size,
n_out=12,
W=U_att_a,
b=LR_att_b
) #basically it is a multiplication between weight matrix and input feature vector
att_score_matrix = T.nnet.sigmoid(layer_att_LR.before_softmax) #batch * 12
att_prob_pos = T.where(labels < 1, 1.0 - att_score_matrix,
att_score_matrix)
att_loss = -T.mean(T.log(att_prob_pos))
'''
ACNN
'''
attentive_conv_layer = Attentive_Conv_for_Pair(
rng,
origin_input_tensor3=common_input,
origin_input_tensor3_r=common_input,
input_tensor3=common_input,
input_tensor3_r=common_input,
mask_matrix=sents_mask,
mask_matrix_r=sents_mask,
image_shape=(batch_size, 1, emb_size, maxSentLen),
image_shape_r=(batch_size, 1, emb_size, maxSentLen),
filter_shape=(hidden_size[0], 1, emb_size, filter_size[0]),
filter_shape_context=(hidden_size[0], 1, emb_size, 1),
W=conv_att_W,
b=conv_att_b,
W_context=conv_W_context,
b_context=conv_b_context)
sent_att_embeddings = attentive_conv_layer.attentive_maxpool_vec_l
attentive_conv_layer2 = Attentive_Conv_for_Pair(
rng,
origin_input_tensor3=common_input,
origin_input_tensor3_r=common_input,
input_tensor3=common_input,
input_tensor3_r=common_input,
mask_matrix=sents_mask,
mask_matrix_r=sents_mask,
image_shape=(batch_size, 1, emb_size, maxSentLen),
image_shape_r=(batch_size, 1, emb_size, maxSentLen),
filter_shape=(hidden_size[0], 1, emb_size, filter_size[1]),
filter_shape_context=(hidden_size[0], 1, emb_size, 1),
W=conv_att_W2,
b=conv_att_b2,
W_context=conv_W_context2,
b_context=conv_b_context2)
sent_att_embeddings2 = attentive_conv_layer2.attentive_maxpool_vec_l
acnn_LR_input = T.concatenate(
[sent_att_embeddings, sent_att_embeddings2, bow_emb], axis=1)
acnn_LR_input_size = hidden_size[0] * 2 + emb_size
#classification layer, it is just mapping from a feature vector of size "hidden_size" to a vector of only two values: positive, negative
acnn_U_a = create_ensemble_para(
rng, 12, acnn_LR_input_size) # the weight matrix hidden_size*2
acnn_LR_b = theano.shared(value=np.zeros((12, ),
dtype=theano.config.floatX),
name='LR_b',
borrow=True) #bias for each target class
acnn_LR_para = [acnn_U_a, acnn_LR_b]
acnn_layer_LR = LogisticRegression(
rng,
input=acnn_LR_input,
n_in=acnn_LR_input_size,
n_out=12,
W=acnn_U_a,
b=acnn_LR_b
) #basically it is a multiplication between weight matrix and input feature vector
acnn_score_matrix = T.nnet.sigmoid(
acnn_layer_LR.before_softmax) #batch * 12
acnn_prob_pos = T.where(labels < 1, 1.0 - acnn_score_matrix,
acnn_score_matrix)
acnn_loss = -T.mean(T.log(acnn_prob_pos))
'''
dataless cosine
'''
cosine_scores = normalize_matrix_rowwise(bow_emb).dot(
normalize_matrix_rowwise(bow_des).T)
cosine_score_matrix = T.nnet.sigmoid(
cosine_scores) #(batch_size, type_size)
'''
dataless top-30 fine grained cosine
'''
fine_grained_cosine = T.batched_dot(
repeat_common_input.dimshuffle(0, 2, 1),
repeat_des_input) #(batch_size*type_size,maxsentlen,describ_max_len)
fine_grained_cosine_to_matrix = fine_grained_cosine.reshape(
(batch_size * type_size, maxSentLen * describ_max_len))
sort_fine_grained_cosine_to_matrix = T.sort(fine_grained_cosine_to_matrix,
axis=1)
top_k_simi = sort_fine_grained_cosine_to_matrix[:,
-30:] # (batch_size*type_size, 5)
max_fine_grained_cosine = T.mean(top_k_simi, axis=1)
top_k_cosine_scores = max_fine_grained_cosine.reshape(
(batch_size, type_size))
top_k_score_matrix = T.nnet.sigmoid(top_k_cosine_scores)
params = multiCNN_para + LR_para + GRU_NN_para + LR_att_para + ACNN_para + acnn_LR_para # put all model parameters together
cost = loss + att_loss + acnn_loss + 1e-4 * ((conv_W**2).sum() +
(conv_W2**2).sum())
updates = Gradient_Cost_Para(cost, params, learning_rate)
'''
testing
'''
ensemble_NN_scores = T.max(T.concatenate([
att_score_matrix.dimshuffle('x', 0, 1),
score_matrix.dimshuffle('x', 0, 1),
acnn_score_matrix.dimshuffle('x', 0, 1)
],
axis=0),
axis=0)
# '''
# majority voting, does not work
# '''
# binarize_NN = T.where(ensemble_NN_scores > 0.5, 1, 0)
# binarize_dataless = T.where(cosine_score_matrix > 0.5, 1, 0)
# binarize_dataless_finegrained = T.where(top_k_score_matrix > 0.5, 1, 0)
# binarize_conc = T.concatenate([binarize_NN.dimshuffle('x',0,1), binarize_dataless.dimshuffle('x',0,1),binarize_dataless_finegrained.dimshuffle('x',0,1)],axis=0)
# sum_binarize_conc = T.sum(binarize_conc,axis=0)
# binarize_prob = T.where(sum_binarize_conc > 0.0, 1, 0)
# '''
# sum up prob, works
# '''
# ensemble_scores_1 = 0.6*ensemble_NN_scores+0.4*top_k_score_matrix
# binarize_prob = T.where(ensemble_scores_1 > 0.3, 1, 0)
'''
sum up prob, works
'''
ensemble_scores = 0.6 * ensemble_NN_scores + 0.4 * 0.5 * (
cosine_score_matrix + top_k_score_matrix)
binarize_prob = T.where(ensemble_scores > 0.3, 1, 0)
#train_model = theano.function([sents_id_matrix, sents_mask, labels], cost, updates=updates, on_unused_input='ignore')
train_model = theano.function(
[sents_id_matrix, sents_mask, labels, des_id_matrix, des_mask],
cost,
updates=updates,
allow_input_downcast=True,
on_unused_input='ignore')
# dev_model = theano.function([sents_id_matrix, sents_mask, labels], layer_LR.errors(labels), allow_input_downcast=True, on_unused_input='ignore')
test_model = theano.function(
[sents_id_matrix, sents_mask, des_id_matrix, des_mask],
binarize_prob,
allow_input_downcast=True,
on_unused_input='ignore')
###############
# TRAIN MODEL #
###############
print '... training'
# early-stopping parameters
patience = 50000000000 # look as this many examples regardless
start_time = time.time()
mid_time = start_time
past_time = mid_time
epoch = 0
done_looping = False
n_train_batches = train_size / batch_size
train_batch_start = list(
np.arange(n_train_batches) * batch_size) + [train_size - batch_size]
# n_dev_batches=dev_size/batch_size
# dev_batch_start=list(np.arange(n_dev_batches)*batch_size)+[dev_size-batch_size]
n_test_batches = test_size / batch_size
test_batch_start = list(
np.arange(n_test_batches) * batch_size) + [test_size - batch_size]
# max_acc_dev=0.0
max_meanf1_test = 0.0
max_weightf1_test = 0.0
train_indices = range(train_size)
cost_i = 0.0
while epoch < n_epochs:
epoch = epoch + 1
random.Random(100).shuffle(train_indices)
iter_accu = 0
for batch_id in train_batch_start: #for each batch
# iter means how many batches have been run, taking into loop
iter = (epoch - 1) * n_train_batches + iter_accu + 1
iter_accu += 1
train_id_batch = train_indices[batch_id:batch_id + batch_size]
cost_i += train_model(train_sents[train_id_batch],
train_masks[train_id_batch],
train_labels[train_id_batch], label_sent,
label_mask)
#after each 1000 batches, we test the performance of the model on all test data
if iter % 20 == 0:
print 'Epoch ', epoch, 'iter ' + str(
iter) + ' average cost: ' + str(cost_i / iter), 'uses ', (
time.time() - past_time) / 60.0, 'min'
past_time = time.time()
error_sum = 0.0
all_pred_labels = []
all_gold_labels = []
for test_batch_id in test_batch_start: # for each test batch
pred_labels = test_model(
test_sents[test_batch_id:test_batch_id + batch_size],
test_masks[test_batch_id:test_batch_id + batch_size],
label_sent, label_mask)
gold_labels = test_labels[test_batch_id:test_batch_id +
batch_size]
# print 'pred_labels:', pred_labels
# print 'gold_labels;', gold_labels
all_pred_labels.append(pred_labels)
all_gold_labels.append(gold_labels)
all_pred_labels = np.concatenate(all_pred_labels)
all_gold_labels = np.concatenate(all_gold_labels)
test_mean_f1, test_weight_f1 = average_f1_two_array_by_col(
all_pred_labels, all_gold_labels)
if test_weight_f1 > max_weightf1_test:
max_weightf1_test = test_weight_f1
if test_mean_f1 > max_meanf1_test:
max_meanf1_test = test_mean_f1
print '\t\t\t\t\t\t\t\tcurrent f1s:', test_mean_f1, test_weight_f1, '\t\tmax_f1:', max_meanf1_test, max_weightf1_test
print 'Epoch ', epoch, 'uses ', (time.time() - mid_time) / 60.0, 'min'
mid_time = time.time()
#print 'Batch_size: ', update_freq
end_time = time.time()
print >> sys.stderr, ('The code for file ' + os.path.split(__file__)[1] +
' ran for %.2fm' % ((end_time - start_time) / 60.))
def main():
sym_y = T.imatrix('target_output')
sym_mask = T.matrix('mask')
sym_x = T.tensor3()
TOL = 1e-5
num_epochs = config.epochs
batch_size = config.batch_size
#### DATA ####
# print "@@@@TESTING@@@@"
# l_in = nn.layers.InputLayer(shape=(None, 700, 42))
# l_dim_a = nn.layers.DimshuffleLayer(
# l_in, (0,2,1))
# l_conv_a = nn.layers.Conv1DLayer(
# incoming=l_dim_a, num_filters=42, border_mode='same',
# filter_size=3, stride=1, nonlinearity=nn.nonlinearities.rectify)
# l_dim_b = nn.layers.DimshuffleLayer(
# l_conv_a, (0,2,1))
# out = nn.layers.get_output(l_dim_b, sym_x)
# testvar = np.ones((128, 700, 42)).astype('float32')
# print "@@@@EVAL@@@@"
# john = out.eval({sym_x: testvar})
# print("Johns shape")
# print(john.shape)
print("Building network ...")
##########################DEBUG##########################
l_in, l_out = config.build_model()
##########################DEBUG##########################
all_layers = nn.layers.get_all_layers(l_out)
num_params = nn.layers.count_params(l_out)
print(" number of parameters: %d" % num_params)
print(" layer output shapes:")
for layer in all_layers:
name = string.ljust(layer.__class__.__name__, 32)
print(" %s %s" % (name, nn.layers.get_output_shape(layer)))
print("Creating cost function")
# lasagne.layers.get_output produces a variable for the output of the net
out_train = nn.layers.get_output(
l_out, sym_x, deterministic=False)
# testvar = np.ones((128, 700, 42)).astype('float32')
# john = out_train.eval({sym_x: testvar})
# print("@@@@@JOHN@@@@@")
# print(john.shape)
# print(john.reshape((-1, num_classes)).shape)
print("Creating eval function")
out_eval = nn.layers.get_output(
l_out, sym_x, deterministic=True)
probs_flat = out_train.reshape((-1, num_classes))
lambda_reg = config.lambda_reg
params = nn.layers.get_all_params(l_out, regularizable=True)
reg_term = sum(T.sum(p ** 2) for p in params)
cost = T.nnet.categorical_crossentropy(T.clip(probs_flat, TOL, 1 - TOL), sym_y.flatten())
cost = T.sum(cost * sym_mask.flatten()) / T.sum(sym_mask) + lambda_reg * reg_term
# Retrieve all parameters from the network
all_params = nn.layers.get_all_params(l_out, trainable=True)
# Setting the weights
if hasattr(config, 'set_weights'):
nn.layers.set_all_param_values(l_out, config.set_weights())
# Compute SGD updates for training
print("Computing updates ...")
if hasattr(config, 'learning_rate_schedule'):
learning_rate_schedule = config.learning_rate_schedule # Import learning rate schedule
else:
learning_rate_schedule = {0: config.learning_rate}
learning_rate = theano.shared(np.float32(learning_rate_schedule[0]))
all_grads = T.grad(cost, all_params)
cut_norm = config.cut_grad
updates, norm_calc = nn.updates.total_norm_constraint(all_grads, max_norm=cut_norm, return_norm=True)
if optimizer == "rmsprop":
updates = nn.updates.rmsprop(updates, all_params, learning_rate)
elif optimizer == "adadelta":
updates = nn.updates.adadelta(updates, all_params, learning_rate)
elif optimizer == "adagrad":
updates = nn.updates.adagrad(updates, all_params, learning_rate)
elif optimizer == "nag":
momentum_schedule = config.momentum_schedule
momentum = theano.shared(np.float32(momentum_schedule[0]))
updates = nn.updates.nesterov_momentum(updates, all_params, learning_rate, momentum)
else:
sys.exit("please choose either <rmsprop/adagrad/adadelta/nag> in configfile")
# Theano functions for training and computing cost
print("config.batch_size %d" % batch_size)
print("data.num_classes %d" % num_classes)
if hasattr(config, 'build_model'):
print("has build model")
print("Compiling train ...")
# Use this for training (see deterministic = False above)
train = theano.function(
[sym_x, sym_y, sym_mask], [cost, out_train, norm_calc], updates=updates)
print("Compiling eval ...")
# use this for eval (deterministic = True + no updates)
eval = theano.function([sym_x, sym_y, sym_mask], [cost, out_eval])
# Start timers
start_time = time.time()
prev_time = start_time
all_losses_train = []
all_accuracy_train = []
all_losses_eval_train = []
all_losses_eval_valid = []
all_losses_eval_test = []
all_accuracy_eval_train = []
all_accuracy_eval_valid = []
all_accuracy_eval_test = []
all_mean_norm = []
import data
X_train, X_valid, y_train, y_valid, mask_train, mask_valid, num_seq_train \
= data.get_train()
print("y shape")
print(y_valid.shape)
print("X shape")
print(X_valid.shape)
# Start training
for epoch in range(num_epochs):
if (epoch % 10) == 0:
print("Epoch %d of %d" % (epoch + 1, num_epochs))
if epoch in learning_rate_schedule:
lr = np.float32(learning_rate_schedule[epoch])
print(" setting learning rate to %.7f" % lr)
learning_rate.set_value(lr)
if optimizer == "nag":
if epoch in momentum_schedule:
mu = np.float32(momentum_schedule[epoch])
print(" setting learning rate to %.7f" % mu)
momentum.set_value(mu)
print("Shuffling data")
seq_names = np.arange(0, num_seq_train)
np.random.shuffle(seq_names)
X_train = X_train[seq_names]
y_train = y_train[seq_names]
mask_train = mask_train[seq_names]
num_batches = num_seq_train // batch_size
losses = []
preds = []
norms = []
for i in range(num_batches):
idx = range(i * batch_size, (i + 1) * batch_size)
x_batch = X_train[idx]
y_batch = y_train[idx]
mask_batch = mask_train[idx]
loss, out, batch_norm = train(x_batch, y_batch, mask_batch)
print(batch_norm)
norms.append(batch_norm)
preds.append(out)
losses.append(loss)
# if ((i+1) % config.write_every_batch == 0) | (i == 0):
# if i == 0:
# start_place = 0
# else:
# start_place = i-config.write_every_batch
# print "Batch %d of %d" % (i + 1, num_batches)
# print " curbatch training loss: %.5f" % np.mean(losses[start_place:(i+1)])
# print " curbatch training acc: %.5f" % np.mean(accuracy[start_place:(i+1)])
predictions = np.concatenate(preds, axis=0)
loss_train = np.mean(losses)
all_losses_train.append(loss_train)
acc_train = utils.proteins_acc(predictions, y_train[0:num_batches * batch_size],
mask_train[0:num_batches * batch_size])
all_accuracy_train.append(acc_train)
mean_norm = np.mean(norms)
all_mean_norm.append(mean_norm)
if 1 == 1:
print(" average training loss: %.5f" % loss_train)
print(" average training accuracy: %.5f" % acc_train)
print(" average norm: %.5f" % mean_norm)
sets = [ # ('train', X_train, y_train, mask_train, all_losses_eval_train, all_accuracy_eval_train),
('valid', X_valid, y_valid, mask_valid, all_losses_eval_valid, all_accuracy_eval_valid)]
for subset, X, y, mask, all_losses, all_accuracy in sets:
print(" validating: %s loss" % subset)
preds = []
num_batches = np.size(X, axis=0) // config.batch_size
for i in range(num_batches): ## +1 to get the "rest"
print(i)
idx = range(i * batch_size, (i + 1) * batch_size)
x_batch = X[idx]
y_batch = y[idx]
mask_batch = mask[idx]
loss, out = eval(x_batch, y_batch, mask_batch)
preds.append(out)
# acc = utils.proteins_acc(out, y_batch, mask_batch)
losses.append(loss)
# accuracy.append(acc)
predictions = np.concatenate(preds, axis=0)
print
" pred"
print(predictions.shape)
print(predictions.dtype)
loss_eval = np.mean(losses)
all_losses.append(loss_eval)
# acc_eval = np.mean(accuracy)
acc_eval = utils.proteins_acc(predictions, y, mask)
all_accuracy.append(acc_eval)
print
" average evaluation loss (%s): %.5f" % (subset, loss_eval)
print
" average evaluation accuracy (%s): %.5f" % (subset, acc_eval)
now = time.time()
time_since_start = now - start_time
time_since_prev = now - prev_time
prev_time = now
est_time_left = time_since_start * num_epochs
eta = datetime.now() + timedelta(seconds=est_time_left)
eta_str = eta.strftime("%c")
print
" %s since start (%.2f s)" % (utils.hms(time_since_start), time_since_prev)
print
" estimated %s to go (ETA: %s)" % (utils.hms(est_time_left), eta_str)
print
if (epoch >= config.start_saving_at) and ((epoch % config.save_every) == 0):
print
" saving parameters and metadata"
with open((metadata_path + "-%d" % (epoch) + ".pkl"), 'w') as f:
pickle.dump({
'config_name': config_name,
'param_values': nn.layers.get_all_param_values(l_out),
'losses_train': all_losses_train,
'accuracy_train': all_accuracy_train,
'losses_eval_train': all_losses_eval_train,
'losses_eval_valid': all_losses_eval_valid,
'losses_eval_test': all_losses_eval_test,
'accuracy_eval_valid': all_accuracy_eval_valid,
'accuracy_eval_train': all_accuracy_eval_train,
'accuracy_eval_test': all_accuracy_eval_test,
'mean_norm': all_mean_norm,
'time_since_start': time_since_start,
'i': i,
}, f, pickle.HIGHEST_PROTOCOL)
print(" stored in %s" % metadata_path)
print
def check(X, i, j, a, b):
k = T.sum(X[:, i:i + a, j:j + b])
return k
def import_F(self, train_set_x, train_weight, train_label, batch_size):
index = T.iscalar()
print('import_Modeling...')
self.f = {
n: theano.function(
[],
f,
name=n,
givens={
self.X: train_set_x,
self.Xlabel: train_label,
self.Weight: train_weight
},
on_unused_input='ignore')
for n, f in zip(['U', 'KL_U', 'KL_X'],
[self.U, self.KL_U, self.KL_X])
}
self.f['LL'] = theano.function(
[index],
outputs=self.LL,
givens={
self.X:
train_set_x[index * batch_size:(index + 1) * batch_size],
self.Xlabel:
train_label[index * batch_size:(index + 1) * batch_size],
self.Weight:
train_weight
},
on_unused_input='ignore')
z = 0.0 * sum([T.sum(v) for v in self.params])
self.g = {
vn: {
gn: theano.function(
[],
T.grad(gv + z, vv),
name='d' + gn + '_d' + vn,
givens={
self.X: train_set_x,
self.Xlabel: train_label,
self.Weight: train_weight
},
on_unused_input='ignore')
for gn, gv in zip(['KL_U', 'KL_X'], [self.KL_U, self.KL_X])
}
for vn, vv in self.wrt.items()
}
for vn, vv in self.wrt.items():
self.g[vn]['LL'] = theano.function(
[index],
T.grad(self.LL + z, vv),
name='dLL' + '_d' + vn,
givens={
self.X:
train_set_x[index * batch_size:(index + 1) * batch_size],
self.Xlabel:
train_label[index * batch_size:(index + 1) * batch_size],
self.Weight:
train_weight
},
on_unused_input='ignore')
def __init__(self, We_initial, params):
initial_We = theano.shared(np.asarray(We_initial, dtype=config.floatX))
We = theano.shared(np.asarray(We_initial, dtype=config.floatX))
#symbolic params
g1batchindices = T.imatrix()
g2batchindices = T.imatrix()
p1batchindices = T.imatrix()
p2batchindices = T.imatrix()
#get embeddings
l_in = lasagne.layers.InputLayer((None, None, 1))
l_emb = lasagne.layers.EmbeddingLayer(
l_in,
input_size=We.get_value().shape[0],
output_size=We.get_value().shape[1],
W=We)
l_average = lasagne_average_layer([l_emb])
embg1 = lasagne.layers.get_output(l_average, {l_in: g1batchindices})
embg2 = lasagne.layers.get_output(l_average, {l_in: g2batchindices})
embp1 = lasagne.layers.get_output(l_average, {l_in: p1batchindices})
embp2 = lasagne.layers.get_output(l_average, {l_in: p2batchindices})
#objective function
g1g2 = (embg1 * embg2).sum(axis=1)
g1g2norm = T.sqrt(T.sum(embg1**2, axis=1)) * T.sqrt(
T.sum(embg2**2, axis=1))
g1g2 = g1g2 / g1g2norm
p1g1 = (embp1 * embg1).sum(axis=1)
p1g1norm = T.sqrt(T.sum(embp1**2, axis=1)) * T.sqrt(
T.sum(embg1**2, axis=1))
p1g1 = p1g1 / p1g1norm
p2g2 = (embp2 * embg2).sum(axis=1)
p2g2norm = T.sqrt(T.sum(embp2**2, axis=1)) * T.sqrt(
T.sum(embg2**2, axis=1))
p2g2 = p2g2 / p2g2norm
costp1g1 = params.margin - g1g2 + p1g1
costp1g1 = costp1g1 * (costp1g1 > 0)
costp2g2 = params.margin - g1g2 + p2g2
costp2g2 = costp2g2 * (costp2g2 > 0)
cost = costp1g1 + costp2g2
self.all_params = lasagne.layers.get_all_params(l_average,
trainable=True)
self.network_params = lasagne.layers.get_all_params(l_average,
trainable=True)
self.network_params.pop(0)
word_reg = 0.5 * params.LW * lasagne.regularization.l2(We - initial_We)
cost = T.mean(cost) + word_reg
#feedforward
self.feedforward_function = theano.function([g1batchindices], embg1)
self.cost_function = theano.function(
[g1batchindices, g2batchindices, p1batchindices, p2batchindices],
cost)
prediction = g1g2
self.scoring_function = theano.function(
[g1batchindices, g2batchindices], prediction)
#updates
if params.updatewords:
grads = theano.gradient.grad(cost, self.all_params)
if params.clip:
grads = [
lasagne.updates.norm_constraint(grad, params.clip,
range(grad.ndim))
for grad in grads
]
updates = params.learner(grads, self.all_params, params.eta)
else:
grads = theano.gradient.grad(cost, self.network_params)
if params.clip:
grads = [
lasagne.updates.norm_constraint(grad, params.clip,
range(grad.ndim))
for grad in grads
]
updates = params.learner(grads, self.network_params, params.eta)
self.train_function = theano.function(
[g1batchindices, g2batchindices, p1batchindices, p2batchindices],
cost,
updates=updates)
def log_mvn(self, y, mean, beta): #対角ノイズ、YはＮ×Ｄのデータ,それの正規分布の対数尤度
N = y.shape[0]
D = y.shape[1]
return -0.5 * D * T.sum(T.log(2 * np.pi *
(1 / T.diag(beta)))) - 0.5 * T.sum(
T.dot(beta, (y - mean)**2))
def LINnn(self, sl2, X):
return sl2 * (T.sum(X**2, 1) + 1) + eps
import numpy as np import theano import theano.tensor as tt from theano.tests import unittest_tools as utt from kepler_op import KeplerOp kepler = KeplerOp() M = tt.dmatrix() e = tt.dmatrix() E = kepler(M, e) f = theano.function([M, e], E) g = theano.function([M, e], theano.grad(tt.sum(E), [M, e])) np.random.seed(42) N = (10, 2) pt = [np.random.uniform(5, 10, N), np.random.rand(*N)] print(f(*pt)) utt.verify_grad(kepler, pt)
def compile_F(self, train_set_x, train_weight, train_label, batch_size):
index = T.iscalar()
print('Modeling...')
model_file_name = 'model2' + '.save'
#もしこれまでに作ったのがあるならロードする
try:
print('Trying to load model...')
with open(model_file_name, 'rb') as file_handle:
obj = pickle.load(file_handle)
self.f, self.g = obj
print('Loaded!')
return
except:
print('Failed. Creating a new model...')
self.f = {
n: theano.function(
[],
f,
name=n,
givens={
self.X: train_set_x,
self.Xlabel: train_label,
self.Weight: train_weight
},
on_unused_input='ignore')
for n, f in zip(['U', 'KL_U', 'KL_X'],
[self.U, self.KL_U, self.KL_X])
}
self.f['LL'] = theano.function(
[index],
outputs=self.LL,
givens={
self.X:
train_set_x[index * batch_size:(index + 1) * batch_size],
self.Xlabel:
train_label[index * batch_size:(index + 1) * batch_size],
self.Weight:
train_weight
},
on_unused_input='ignore')
z = 0.0 * sum([T.sum(v) for v in self.params])
self.g = {
vn: {
gn: theano.function(
[],
T.grad(gv + z, vv),
name='d' + gn + '_d' + vn,
givens={
self.X: train_set_x,
self.Xlabel: train_label,
self.Weight: train_weight
},
on_unused_input='ignore')
for gn, gv in zip(['KL_U', 'KL_X'], [self.KL_U, self.KL_X])
}
for vn, vv in self.wrt.items()
}
for vn, vv in self.wrt.items():
self.g[vn]['LL'] = theano.function(
[index],
T.grad(self.LL + z, vv),
name='dLL' + '_d' + vn,
givens={
self.X:
train_set_x[index * batch_size:(index + 1) * batch_size],
self.Xlabel:
train_label[index * batch_size:(index + 1) * batch_size],
self.Weight:
train_weight
},
on_unused_input='ignore')
with open(model_file_name, 'wb') as file_handle:
print('Saving model...')
sys.setrecursionlimit(100000)
pickle.dump([self.f, self.g],
file_handle,
protocol=pickle.HIGHEST_PROTOCOL)
def cmmd(dataset='mnist.pkl.gz',batch_size=500, layer_num = 2, hidden_dim = 20,seed = 0,layer_size=[500,200,100]):
validation_frequency = 1
test_frequency = 1
pre_train = 0
pre_train_epoch = 30
print "Loading data ......."
datasets = datapy.load_data_gpu_60000(dataset, have_matrix = True)
train_set_x, train_set_y, train_y_matrix = datasets[0]
valid_set_x, valid_set_y, valid_y_matrix = datasets[1]
test_set_x, test_set_y, test_y_matrix = datasets[2]
n_train_batches = train_set_x.get_value().shape[0] / batch_size
n_valid_batches = valid_set_x.get_value(borrow=True).shape[0] / batch_size
n_test_batches = test_set_x.get_value(borrow=True).shape[0] / batch_size
rng = np.random.RandomState(seed)
rng_share = theano.tensor.shared_randomstreams.RandomStreams(0)
################################
## build model ##
################################
print "Building model ......."
index = T.lscalar()
x = T.matrix('x') ##### batch_size * 28^2
y = T.vector('y')
y_matrix = T.matrix('y_matrix')
random_z = T.matrix('random_z') ### batch_size * hidden_dim
Inv_K_d = T.matrix('Inv_K_d')
layers = []
layer_output= []
activation = nonlinearity.relu
#activation = Tnn.sigmoid
#### first layer
layers.append(FullyConnected.FullyConnected(
rng = rng,
n_in = 28*28 + hidden_dim,
#n_in = 28*28,
n_out = layer_size[0],
activation = activation
))
layer_output.append(layers[-1].output_mix(input=[x,random_z]))
#layer_output.append(layers[-1].output(input=x))
#### middle layer
for i in range(layer_num):
layers.append(FullyConnected.FullyConnected(
rng = rng,
n_in = layer_size[i],
n_out = layer_size[i+1],
activation = activation
))
layer_output.append(layers[-1].output(input= layer_output[-1]))
#### last layer
activation = Tnn.sigmoid
layers.append(FullyConnected.FullyConnected(
rng = rng,
n_in = layer_size[-1],
n_out = 10,
activation = activation
))
y_gen = layers[-1].output(input = layer_output[-1])
lambda1_ = 1e-3
lambda_= theano.shared(np.asarray(lambda1_, dtype=np.float32))
K_d = kernel_gram_for_x(x,x,batch_size,28*28)
K_s = K_d
K_sd = K_d
#Inv_K_d = NL.matrix_inverse(K_d +lambda_ * T.identity_like(K_d))
Inv_K_s = Inv_K_d
L_d = kernel_gram(y_matrix,y_matrix,batch_size,10)
L_s = kernel_gram(y_gen,y_gen,batch_size,10)
L_ds = kernel_gram(y_matrix,y_gen,batch_size,10)
cost = -(NL.trace(K_d * Inv_K_d * L_d * Inv_K_d) +\
NL.trace(K_s * Inv_K_s * L_s * Inv_K_s)- \
NL.trace(K_sd * Inv_K_d * L_ds * Inv_K_s))
cost_pre = -T.sum(T.sqr(y_matrix - y_gen))
cc = T.argmax(y_gen,axis=1)
correct = T.sum(T.eq(T.cast(T.argmax(y_gen,axis=1),'int32'),T.cast(y,'int32')))
################################
## updates ##
################################
params = []
for aLayer in layers:
params += aLayer.params
gparams = [T.grad(cost,param) for param in params]
gparams_pre = [T.grad(cost_pre,param) for param in params]
learning_rate = 3e-4
weight_decay=1.0/n_train_batches
epsilon=1e-8
l_r = theano.shared(np.asarray(learning_rate, dtype=np.float32))
get_optimizer = optimizer.get_adam_optimizer_max(learning_rate=l_r,
decay1=0.1, decay2=0.001, weight_decay=weight_decay, epsilon=epsilon)
updates = get_optimizer(params,gparams)
updates_pre = get_optimizer(params,gparams_pre)
################################
## pretrain model ##
################################
parameters = theano.function(
inputs = [],
outputs = params,
)
'''
pre_train_model = theano.function(
inputs = [index,random_z],
outputs = [cost_pre, correct],
updates=updates_pre,
givens={
x:train_set_x[index * batch_size:(index + 1) * batch_size],
y:train_set_y[index * batch_size:(index + 1) * batch_size],
y_matrix:train_y_matrix[index * batch_size:(index + 1) * batch_size],
},
on_unused_input='warn'
)
cur_epoch = 0
if pre_train == 1:
for cur_epoch in range(pre_train_epoch):
print 'cur_epoch: ', cur_epoch,
cor = 0
for minibatch_index in range(n_train_batches):
cost_pre_mini,correct_pre_mini = pre_train_model(minibatch_index,gen_random_z(batch_size,hidden_dim))
cor = cor + correct_pre_mini
print 'correct number: ' , cor
#np.savez(,model = model)
'''
if pre_train == 1:
print "pre-training model....."
pre_train = np.load('model.npz')['model']
for (para, pre) in zip(params, pre_train):
para.set_value(pre)
################################
## prepare data ##
################################
#### compute matrix inverse
print "Preparing data ...."
Invv = NL.matrix_inverse(K_d +lambda_ * T.identity_like(K_d))
prepare_data = theano.function(
inputs = [index],
outputs = [Invv,K_d],
givens = {
x:train_set_x[index * batch_size:(index + 1) * batch_size],
}
)
Inv_K_d_l, K_d_l = prepare_data(0)
for minibatch_index in range(1, n_train_batches):
if minibatch_index % 10 == 0:
print 'minibatch_index:', minibatch_index
Inv_pre_mini, K_d_pre_mini = prepare_data(minibatch_index)
Inv_K_d_l = np.vstack((Inv_K_d_l,Inv_pre_mini))
K_d_l = np.vstack((K_d_l,K_d_pre_mini))
Inv_K_d_g = theano.shared(Inv_K_d_l,borrow=True)
K_d_g = theano.shared(K_d_l, borrow=True)
################################
## train model ##
################################
train_model = theano.function(
inputs = [index,random_z],
outputs = [correct,cost,y,cc,y_gen],
updates=updates,
givens={
x:train_set_x[index * batch_size:(index + 1) * batch_size],
y:train_set_y[index * batch_size:(index + 1) * batch_size],
y_matrix:train_y_matrix[index * batch_size:(index + 1) * batch_size],
#K_d:K_d_g[index * batch_size:(index + 1) * batch_size],
Inv_K_d:Inv_K_d_g[index * batch_size:(index + 1) * batch_size],
},
on_unused_input='warn'
)
valid_model = theano.function(
inputs = [index,random_z],
outputs = correct,
#updates=updates,
givens={
x:valid_set_x[index * batch_size:(index + 1) * batch_size],
y:valid_set_y[index * batch_size:(index + 1) * batch_size],
y_matrix:valid_y_matrix[index * batch_size:(index + 1) * batch_size],
},
on_unused_input='warn'
)
test_model = theano.function(
inputs = [index,random_z],
outputs = [correct,y_gen],
#updates=updates,
givens={
x:test_set_x[index * batch_size:(index + 1) * batch_size],
y:test_set_y[index * batch_size:(index + 1) * batch_size],
y_matrix:test_y_matrix[index * batch_size:(index + 1) * batch_size],
},
on_unused_input='warn'
)
n_epochs = 500
cur_epoch = 0
print "Training model ......"
while (cur_epoch < n_epochs) :
cur_epoch = cur_epoch + 1
cor = 0
for minibatch_index in xrange(n_train_batches):
print minibatch_index,
print " : ",
correct,cost,a,b,y_gen = train_model(minibatch_index,gen_random_z(batch_size,hidden_dim))
cor = cor + correct
print correct
print b
print y_gen
with open('log.txt','a') as f:
print >>f , "epoch: " , cur_epoch, "training_correct: " , cor
if cur_epoch % validation_frequency == 0:
cor2 = 0
for minibatch_index in xrange(n_valid_batches):
correct = valid_model(minibatch_index,gen_random_z(batch_size,hidden_dim))
cor2 = cor2 + correct
with open('log.txt','a') as f:
print >>f , " validation_correct: " , cor2
if cur_epoch % test_frequency == 0:
cor2 = 0
for minibatch_index in xrange(n_test_batches):
correct,y_gen = test_model(minibatch_index,gen_random_z(batch_size,hidden_dim))
with open('log.txt','a') as f:
for index in range(batch_size):
if not np.argmax(y_gen[index]) == test_set_y[minibatch_index * batch_size + index]:
print >>f , "index: " , minibatch_index * batch_size + index, 'true Y: ', test_set_y[minibatch_index * batch_size + index]
print >>f , 'gen_y: ' , y_gen[index]
cor2 = cor2 + correct
with open('log.txt','a') as f:
print >>f , " test_correct: " , cor2
if epoch %1 == 0:
model = parameters()
for i in range(len(model)):
model[i] = np.asarray(model[i]).astype(np.float32)
np.savez('model-'+str(epoch),model=model)
def __init__(self, D, M, Q, Domain_number, m, pre_params, Hiddenlayerdim1,
Hiddenlayerdim2):
self.Xlabel = T.matrix('Xlabel')
self.X = T.matrix('X')
N = self.X.shape[0]
self.Weight = T.matrix('Weight')
ker = kernel(Q)
mmd = MMD(M, Domain_number)
mu_value = np.random.randn(M, D)
Sigma_b_value = np.zeros((M, M)) + np.log(0.01)
Z_value = m[:M]
self.test = Z_value
ls_value = np.zeros(Domain_number) + np.log(0.1)
self.mu = theano.shared(value=mu_value, name='mu', borrow=True)
self.Sigma_b = theano.shared(value=Sigma_b_value,
name='Sigma_b',
borrow=True)
self.Z = theano.shared(value=Z_value, name='Z', borrow=True)
self.ls = theano.shared(value=ls_value, name='ls', borrow=True)
self.params = [self.mu, self.Sigma_b, self.Z, self.ls]
self.hiddenLayer_x = HiddenLayer(rng=rng,
input=self.X,
n_in=D,
n_out=Hiddenlayerdim1,
activation=T.nnet.relu,
number='_x')
self.hiddenLayer_hidden = HiddenLayer(rng=rng,
input=self.hiddenLayer_x.output,
n_in=Hiddenlayerdim1,
n_out=Hiddenlayerdim2,
activation=T.nnet.relu,
number='_h')
self.hiddenLayer_m = HiddenLayer(rng=rng,
input=self.hiddenLayer_hidden.output,
n_in=Hiddenlayerdim2,
n_out=Q,
activation=T.nnet.relu,
number='_m')
self.hiddenLayer_S = HiddenLayer(rng=rng,
input=self.hiddenLayer_hidden.output,
n_in=Hiddenlayerdim2,
n_out=Q,
activation=T.nnet.relu,
number='_S')
self.loc_params = []
self.loc_params.extend(self.hiddenLayer_x.params)
self.loc_params.extend(self.hiddenLayer_hidden.params)
self.loc_params.extend(self.hiddenLayer_m.params)
self.loc_params.extend(self.hiddenLayer_S.params)
self.local_params = {}
for i in self.loc_params:
self.local_params[str(i)] = i
self.params.extend(ker.params)
self.params.extend(mmd.params)
self.hyp_params = {}
for i in [self.mu, self.Sigma_b, self.ls]:
self.hyp_params[str(i)] = i
self.Z_params = {}
for i in [self.Z]:
self.Z_params[str(i)] = i
self.global_params = {}
for i in self.params:
self.global_params[str(i)] = i
self.params.extend(self.hiddenLayer_x.params)
self.params.extend(self.hiddenLayer_hidden.params)
self.params.extend(self.hiddenLayer_m.params)
self.params.extend(self.hiddenLayer_S.params)
self.wrt = {}
for i in self.params:
self.wrt[str(i)] = i
for i, j in pre_params.items():
self.wrt[i].set_value(j)
m = self.hiddenLayer_m.output
S_0 = self.hiddenLayer_S.output
S_1 = T.exp(S_0)
S = T.sqrt(S_1)
from theano.tensor.shared_randomstreams import RandomStreams
srng = RandomStreams(seed=234)
eps_NQ = srng.normal((N, Q))
eps_M = srng.normal((M, D)) #平均と分散で違う乱数を使う必要があるので別々に銘銘
beta = T.exp(self.ls)
#uについては対角でないのでコレスキー分解するとかして三角行列を作る必要がある
Sigma = T.tril(self.Sigma_b - T.diag(T.diag(self.Sigma_b)) +
T.diag(T.exp(T.diag(self.Sigma_b))))
#スケール変換
mu_scaled, Sigma_scaled = ker.sf2**0.5 * self.mu, ker.sf2**0.5 * Sigma
Xtilda = m + S * eps_NQ
self.U = mu_scaled + Sigma_scaled.dot(eps_M)
Kmm = ker.RBF(self.Z)
Kmm = mmd.MMD_kenel_Xonly(mmd.Zlabel_T, Kmm, self.Weight)
KmmInv = sT.matrix_inverse(Kmm)
Kmn = ker.RBF(self.Z, Xtilda)
Kmn = mmd.MMD_kenel_ZX(self.Xlabel, Kmn, self.Weight)
Knn = ker.RBF(Xtilda)
Knn = mmd.MMD_kenel_Xonly(self.Xlabel, Knn, self.Weight)
Ktilda = Knn - T.dot(Kmn.T, T.dot(KmmInv, Kmn))
Kinterval = T.dot(KmmInv, Kmn)
mean_U = T.dot(Kinterval.T, self.U)
betaI = T.diag(T.dot(self.Xlabel, beta))
Covariance = betaI
self.LL = (self.log_mvn(self.X, mean_U, Covariance) -
0.5 * T.sum(T.dot(betaI, Ktilda)))
self.KL_X = -self.KLD_X(m, S)
self.KL_U = -self.KLD_U(mu_scaled, Sigma_scaled, Kmm, KmmInv)
