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Clinical-Genomics/cgstats

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CGSTATS Build Status

Models and CRUD to cgstats.

configuration

cgstats has a parameter --database that needs to hold a connection string to the database:

$ cgstats --database mysql+pymysql://user:pass@127.0.0.1:3306/cgstats

Table description

supportparams: holds the data regarding how the demultiplexing was started

datasource: holds the data where and when the run was processed

demux: holds the basemask and demux datetime

flowcell: holds the data about the flowcell and the HiSeq type

unaligned: holds the demultiplexing statistics

sample: holds the data regarding sample name

project: holds the data regarding the project name

version: holds the version data of the database itself. Scripts are developed with a certain version of the database in mind and check with each execution if the correct version of the database is being accessed.

backup: holds the data regarding backup of a run

backtape: holds the backup tape's name