The source code used in my thesis <Reconstructing the free energy landscape of bacteriorhodopsin folding by single-molecule force spectroscopy>

The used modules includes standar python data analize modules like numpy, scipy, pandas, ect. And

hmmlearn: https://github.com/hmmlearn/hmmlearn

lmfit: https://github.com/lmfit/lmfit-py/

NOTE that python file in it can't be ran directely, and anyone wants to use these module should consider modify these code(funtions) based your data.