/
LBL_utils.py
573 lines (531 loc) · 23.4 KB
/
LBL_utils.py
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from keras import layers,models
from keras import optimizers
from keras.preprocessing.image import ImageDataGenerator
import os,sys
def get_normal_network_CD(conv_layers,dense_layers,input_shape=(150,150,3)):
#Returns a compiled small network with conv layers and dense_layers
from keras.models import Sequential
model = Sequential()
if(len(conv_layers)>0):
### Add convolutional layers and pooling
### Add input layer
model.add(layers.Conv2D(conv_layers[0],(3,3),activation='relu',input_shape=input_shape))
model.add(layers.MaxPooling2D(2,2))
### Add hidden convólutional layers
for conv_size in conv_layers[1:]:
model.add(layers.Conv2D(conv_size,(3,3),activation='relu'))
model.add(layers.MaxPooling2D(2,2))
### Prepare for dense by adding a flatten
model.add(layers.Flatten())
else:
print("No convolutional layers in model")
print("Error, no layers in model")
return 0
for dense_size in dense_layers:
model.add(layers.Dense(dense_size,activation='relu'))
model.add(layers.Dense(1,activation='sigmoid'))
return model
def train_comparison_networks_CD(conv_layers,dense_layers,train_generator,validation_generator,nbr_epochs=80,network_name="CD_normal",path="",input_shape=(150,150,3)):
"""
Function for generting comparison networks and training them
"""
for i in range(len(conv_layers)):
nbr_layers_added = i+1
model = get_normal_network_CD(conv_layers[0:nbr_layers_added],dense_layers=[],input_shape=input_shape)
model.compile(loss='binary_crossentropy',
optimizer=optimizers.RMSprop(lr=1e-4),
metrics=['acc'])
model.summary()
history = model.fit_generator(
train_generator,
steps_per_epoch=100,
epochs=nbr_epochs,
validation_data=validation_generator,
validation_steps=50)
model_name = network_name+"_conv_"+str(nbr_epochs)+"e_"+str(nbr_layers_added)+"L"
file_name = model_name+"results.txt"#change so that this
print_results_to_file(model,history,file_name,model_name,path=path)
model_name = path+model_name+".h5"
model.save(model_name)
### Then add the dense layers
for i in range(len(dense_layers)):
nbr_layers_added = i+1
model = get_normal_network_CD(conv_layers,dense_layers[0:nbr_layers_added],input_shape=input_shape)
model.compile(loss='binary_crossentropy',
optimizer=optimizers.RMSprop(lr=1e-4),
metrics=['acc'])
model.summary()
history = model.fit_generator(
train_generator,
steps_per_epoch=100,
epochs=nbr_epochs,
validation_data=validation_generator,
validation_steps=50)
model_name = network_name+"_dense_"+str(nbr_epochs)+"e_"+str(nbr_layers_added)+"L"
file_name = model_name+"results.txt"#change so that this
print_results_to_file(model,history,file_name,model_name,path=path)
model_name = path+model_name+".h5"
model.save(model_name)
return "Success"
def create_growing_conv_network(input_shape = (28,28,1),conv_base_dim=32,number_of_outputs=1):
"""Creates and compiles a deep learning network with only input and output layers.
Starts from a convolutional layer(input), a max-pooling layer,flatten and dense(output)
Model suitable for adding intermediate layers between theese.
Inputs:
input_shape: size of the images to be analyzed [3-ple of positive integers, x-pixels by y-pixels by color channels]
conv_layers_dimensions: number of convolutions in each convolutional layer [tuple of positive integers]
Output:
network: deep learning network conv base
"""
network = models.Sequential()
conv_layer_name = 'conv_1'
conv_layer = layers.Conv2D(
conv_base_dim,
(3, 3),
activation='relu',
input_shape=input_shape,
name=conv_layer_name)
network.add(conv_layer)
pooling_layer_name = 'pooling_2'
pooling_layer = layers.MaxPooling2D(2, 2, name=pooling_layer_name)
network.add(pooling_layer)
# FLATTENING
flatten_layer_name = 'flatten'
flatten_layer = layers.Flatten(name=flatten_layer_name)
network.add(flatten_layer)
# OUTPUT LAYER
output_layer = layers.Dense(number_of_outputs,activation='softmax',name='output')
network.add(output_layer)
network.compile(loss='binary_crossentropy',
optimizer=optimizers.RMSprop(lr=1e-4),
metrics=['acc'])
return network
def create_growing_dense_network(input_size=64,layer_size=64,output_size=10):
network = models.Sequential()
network.add(layers.Dense(layer_size,activation='relu',input_shape=input_size))
network.add(layers.Dense(output_size,activation='softmax'))
network.compile(loss='binary_crossentropy',
optimizer=optimizers.RMSprop(lr=1e-4),
metrics=['acc'])
return network
def add_conv_layer(old_network,new_layer_output_size=32,number_of_outputs=1):
from keras import models, layers
# Function for adding a new conv layer to a network and freezing previously existing weights
# Input: Network to be grown
# Output: New network with one untrained layer (excluding output layer)
new_network=models.Sequential()
nbr_of_layers = len(old_network.layers)
for i in range(nbr_of_layers-2): # assumes there is a flatten layer before the last dense one
old_network.layers[i].trainable=False
new_network.add(old_network.layers[i])
conv_layer_name = 'conv_' + str(nbr_of_layers)
conv_layer = layers.Conv2D(new_layer_output_size,
(3, 3),
activation='relu',
name=conv_layer_name)
new_network.add(conv_layer)
# POOLIING LAYER
pooling_layer_name = 'pooling_' + str(nbr_of_layers+1)
pooling_layer = layers.MaxPooling2D(2, 2, name=pooling_layer_name)
new_network.add(pooling_layer)
# FLATTENING
flatten_layer_name = 'flatten'
flatten_layer = layers.Flatten(name=flatten_layer_name)
new_network.add(flatten_layer)
# OUTPUT LAYER
output_layer = layers.Dense(number_of_outputs,activation='softmax',name='output') # or sigmoid?
new_network.add(output_layer)
new_network.compile(loss='binary_crossentropy',
optimizer=optimizers.RMSprop(lr=1e-4),
metrics=['acc'])
return new_network
def get_mnist_data_flattened(type=0):
"""
Returns mnist
"""
import numpy as np
from keras.datasets import mnist
from keras.utils import to_categorical
# Load data
(train_images, train_labels), (test_images,test_labels) = mnist.load_data()
s1=np.shape(train_images)
s2=np.shape(test_images)
# Reformat input & labels
train_images = train_images.reshape((s1[0], s1[1]*s1[2] ))
train_images = train_images.astype('float32')/255
test_images=test_images.reshape((s2[0], s2[1]*s2[2] ))
test_images = test_images.astype('float32')/255
print('Successfully reformated the images')
train_labels = to_categorical(train_labels)
test_labels = to_categorical(test_labels)
return train_images,train_labels,test_images,test_labels
def dense_mnist_LBL(nbr_of_layers=50,epochs=5,results_path="",save_models=False,models_path=""):
"""
Function for generating
"""
from keras import models,layers
import numpy as np
train_images,train_labels,test_images,test_labels = get_mnist_data_flattened()
network_a = models.Sequential()
network_a.add(layers.Dense(512,activation='relu',input_shape=(28 * 28,)))
network_a.add(layers.Dense(10,activation='softmax'))
network_a.compile(optimizer='rmsprop',loss='categorical_crossentropy',metrics=['accuracy'])
#nbr of internal layers
results = []
network_a.summary()
network_a.fit(train_images, train_labels, epochs=epochs, batch_size=128)
for i in range(nbr_of_layers):
if(i%2==0):
network_b=grow_network_mnist(network_a,32,10)
network_b.compile(optimizer='rmsprop',loss='categorical_crossentropy',metrics=['accuracy'])
network_b.summary()
network_b.fit(train_images, train_labels, epochs=epochs, batch_size=128,verbose=2 )
if(save_models):
model_name = "MNIST_LBL_layer"+str(i+2)+"trainedfor"+str(epochs)+"e.h5"
network_b.save(models_path+model_name)
results.append(network_b.evaluate(test_images,test_labels))
del(network_a)
else:
network_a=grow_network_mnist(network_b)
network_a.compile(optimizer='rmsprop',loss='categorical_crossentropy',metrics=['accuracy'])
network_a.summary()
network_a.fit(train_images, train_labels, epochs=epochs, batch_size=128,verbose=2)
if(save_models):
model_name = "MNIST_LBL_layer"+str(i+2)+"trainedfor"+str(epochs)+"e.h5"
network_a.save(models_path+model_name)
results.append(network_a.evaluate(test_images,test_labels))
del(network_b)
print('b')
if(i%2==1):
network = network_a
else:
network = network_b
result_name = 'MNIST_LBL_res_'+str(epochs)+'epochs_'+str(nbr_of_layers)+'layers'
np.save(results_path+result_name,results)
return network
def dense_mnist_normal(nbr_of_layers=50,epochs=5,results_path="",save_models=False,models_path=""):
"""
Function which trains a set of networks the normal way as comparsion
"""
from keras import models,layers
import numpy as np
train_images,train_labels,test_images,test_labels = get_mnist_data_flattened()
results = []
for m in range(nbr_of_layers):
network_traditional=models.Sequential()
network_traditional.add(layers.Dense(512,activation='relu',input_shape=(28 * 28,)))
for n in range(m):
network_traditional.add(layers.Dense(32,activation='relu'))#not supposed to be here
network_traditional.add(layers.Dense(10,activation='softmax'))
network_traditional.summary()
network_traditional.compile(optimizer='rmsprop',loss='categorical_crossentropy',metrics=['accuracy'])
network_traditional.fit(train_images, train_labels, epochs=epochs, batch_size=128,verbose=2)
if(save_models):
model_name = "MNIST_Normal_layer"+str(m+2)+"trainedfor"+str(epochs)+"e.h5"
network_traditional.save(models_path+model_name)
result_name = 'MNIST_normal_res_'+str(epochs)+'epochs_'+str(nbr_of_layers)+'layers'
np.save(results_path+result_name,results)
return network_traditional
def grow_network_mnist(old_network,new_layer_size=32,output_size=10):
new_network=models.Sequential()
nbr_of_layers = len(old_network.layers)
for i in range(nbr_of_layers-1):
old_network.layers[i].trainable=False
new_network.add(old_network.layers[i])
new_network.add(layers.Dense(new_layer_size,activation='relu'))
new_network.add(layers.Dense(output_size,activation='softmax'))
return new_network
def get_partial_output(network,training_data,offset=2):
"""
Function for getting all the outputs from early convolutional layers and putting
it into an array.
Potentially saving training time.
Input:
network - network to be analyzed (must be Sequential at this stage)
training data - data to be converted to array/file
offset - How many layers at the end of network one needs to skip
Output:
array with the result of all the training data when run through the
network(excluding the end of it).
"""
# Transfer network into a new model
output_network = models.Sequential()
assert(offset>0)
for i in range(len(network.layers)-offset):
print(network.layers[i].name)
output_network.add(network.layers[i])
output_network.compile(loss='binary_crossentropy',
optimizer=optimizers.RMSprop(lr=1e-4),
metrics=['acc'])
output = output_network.predict(training_data)
del(output_network)
return output
# def grow_conv_network(conv_layers, dense_layers,train_generator,validation_generator,output_size = 1,nbr_epochs=20):
# """
# function for creating, training and growing a conv network.
# Input :
# training data, size of and number of convolutional and dense layers
# Output :
# A conv net trained using the growing technique on the train images
# """
# final_network = models.Sequential() # final grown network
# nbr_conv_layers = len(conv_layers)
# nbr_dense_layers = len(dense_layers)
# offset = 2
#
#
# ### Create and train conv network base
#
# for i in range(nbr_conv_layers):
#
# # Create and train "single" conv layer network
# # network_a and network_b temporary networks used during training
# if(i==0):
# network_a = create_growing_conv_network(input_shape=(150, 150, 3),conv_base_dim=conv_layers[0],number_of_outputs=output_size)
# # network_b = add_conv_layer(network_a,new_layer_output_size=conv_layers[1],number_of_outputs=output_size)
# # del(network_a)
# # network_a=network_b
# # for l in range(len(network_a.layers)):
# # network_a.layers[l].trainable=True
# # del(network_b)
# network_a.compile(loss='binary_crossentropy',
# optimizer=optimizers.RMSprop(lr=1e-4),
# metrics=['acc'])
# else:
# network_b = add_conv_layer(network_a,new_layer_output_size=conv_layers[i],number_of_outputs=output_size)
# del(network_a)
# network_a=network_b
# del(network_b)
# network_a.summary()
# history = network_a.fit_generator(
# train_generator,
# steps_per_epoch=100,
# epochs=nbr_epochs,
# validation_data=validation_generator,
# validation_steps=50)
#
# ### Add conv & pooling layers to final model
# # speed up if there is no reflow of data thorugh model
# print(network_a.layers[-4].name)
# final_network.add(network_a.layers[-4])
# conv_name = 'conv_layer_'+str(i)
# final_network.layers[-1].name=conv_name# names may not be the same
#
# final_network.add(network_a.layers[-3])
# pooling_name = 'pooling_layer_'+str(i)
# final_network.layers[-1].name=pooling_name
#
# # Transfer also flatten layer if we are at the last iteration
# if(i==nbr_conv_layers-1):
# final_network.add(network_a.layers[2])
# offset = 1# want to get the flatten output
# print("final_network:")
# final_network.summary()
# offset=1
#
# ### Add and train the dense top
# for i in range(nbr_dense_layers):
# print(output_size)
# network_a = create_growing_dense_network(
# input_size=input_shape,
# layer_size=dense_layers[i],
# output_size=output_size)
# network_a.summary()
# network_a.fit(prev_output, train_labels, epochs=nbr_epochs, batch_size=64)
# ### Add dense layer to final model
# final_network.add(network_a.layers[0])
# dense_name = 'dense_layer_'+str(i)
# final_network.layers[-1].name=dense_name# names may not be the same
# if(i==nbr_dense_layers-1):
# final_network.add(network_a.layers[1])
# prev_output = get_partial_output(network_a,prev_output,offset=offset)
# input_shape = prev_output.shape[1:] #shape may change
#
# final_network.summary()
# final_network.compile(loss='binary_crossentropy',
# optimizer=optimizers.RMSprop(lr=1e-4),
# metrics=['acc'])
# return final_network
def LBL_network_classification(
conv_layers,
dense_layers,
train_generator,
validation_generator,
input_shape=(150,150,3),
nbr_outputs=1,
nbr_epochs=20,
save_results=False,
network_name="CD",
result_dir=""):
from keras import Input
input_tensor = Input(input_shape)
final_layers_list=[]
#Create first layer model
conv_layer = layers.Conv2D(conv_layers[0],(3,3),activation='relu')(input_tensor)
pooling = layers.MaxPooling2D((2,2))(conv_layer)
output = layers.Flatten()(pooling)
output = layers.Dense(nbr_outputs,activation="sigmoid")(output)
model = models.Model(input_tensor,output)
final_layers_list.append(conv_layer)
final_layers_list.append(pooling)
model.compile(loss='binary_crossentropy',
optimizer=optimizers.RMSprop(lr=1e-4),
metrics=['acc'])
model.summary()
history = model.fit_generator(
train_generator,
steps_per_epoch=100,
epochs=nbr_epochs,
validation_data=validation_generator,
validation_steps=50)
final_layers_list[-1].trainable=False
### add subsequent layers
idx=1 # Counts the layer indices
if(save_results):
model_name = network_name+"_conv_"+str(nbr_epochs)+"e_"+str(idx)+"L"
file_name = model_name+"results.txt"#change so that this
print_results_to_file(model,history,file_name,model_name,path=result_dir)
model_name = result_dir+model_name+".h5"
model.save(model_name)
for conv_size in conv_layers[1:]:
idx += 1
### Create new layer along with pooling etc
conv_layer = layers.Conv2D(conv_size,(3,3),activation='relu')(final_layers_list[-1])
pooling = layers.MaxPooling2D((2,2))(conv_layer)
flatten = layers.Flatten()(pooling)
output = layers.Dense(nbr_outputs,activation="sigmoid")(flatten)
model = models.Model(input_tensor,output)
final_layers_list.append(conv_layer)
final_layers_list.append(pooling)
### Set layers in model untrainable
for i in range(len(model.layers)-4):
model.layers[i].trainable=False
### compile and fit model
model.compile(loss='binary_crossentropy',
optimizer=optimizers.RMSprop(lr=1e-4),
metrics=['acc'])
model.summary()
history = model.fit_generator(
train_generator,
steps_per_epoch=100,
epochs=nbr_epochs,
validation_data=validation_generator,
validation_steps=50)
# Save reuslts to a file
if(save_results):
model_name = network_name+"_conv_"+str(nbr_epochs)+"e_"+str(idx)+"L"
file_name = model_name+"results.txt"#change so that this
print_results_to_file(model,history,file_name,model_name,path=result_dir)
model_name = result_dir+model_name+".h5"
model.save(model_name)
## Add the flatten layer to bridge from conv to dense layers
final_layers_list.append(flatten)
### Add the dense layers
for dense_size in dense_layers:
idx += 1
dense_layer = layers.Dense(dense_size,activation='relu')(final_layers_list[-1])
output = layers.Dense(nbr_outputs,activation="sigmoid")(dense_layer)
model = models.Model(input_tensor,output)
final_layers_list.append(dense_layer)
model = models.Model(input_tensor,output)
for i in range(len(model.layers)-2):
model.layers[i].trainable=False
model.summary()
model.compile(loss='binary_crossentropy',
optimizer=optimizers.RMSprop(lr=1e-4),
metrics=['acc'])
model.summary()
history = model.fit_generator(
train_generator,
steps_per_epoch=100,
epochs=nbr_epochs,
validation_data=validation_generator,
validation_steps=50)
if(save_results):
model_name = network_name+"_dense_"+str(nbr_epochs)+"e_"+str(idx)+"L"
file_name = model_name+"results.txt"#change so that this
print_results_to_file(model,history,file_name,model_name,path=result_dir)
model_name = result_dir+model_name+".h5"
model.save(model_name)
return model,final_layers_list
def print_results_to_file(network,history,file_name,model_name,path=""):
"""
Prints history and model setup
Inputs:
Network, network history and network/model name
Ouputs:
file with model summary and the data from the history
"""
import numpy as np
file_trad = open(path+file_name, "w")
# Print to file
orig_std_out = sys.stdout
sys.stdout = file_trad
print(network.summary())
sys.stdout = orig_std_out
file_trad.write(model_name+'acc = ')
file_trad.write(str(history.history['acc']))
file_trad.write(';\n')
file_trad.write(model_name+'val_acc = ')
file_trad.write(str(history.history['val_acc']))
file_trad.write(';\n')
file_trad.write(model_name+'loss = ')
file_trad.write(str(history.history['loss']))
file_trad.write(';\n')
file_trad.write(model_name+'val_loss = ')
file_trad.write(str(history.history['val_loss']))
file_trad.write(';\n')
file_trad.close()
# Save to numpy array
file_length = len(history.history['acc'])
np_results = np.zeros((4,file_length))
np_results[0,:] = history.history['acc']
np_results[1,:] = history.history['val_acc']
np_results[2,:] = history.history['loss']
np_results[3,:] = history.history['val_loss']
np_filname = path+model_name+"np_res"
np.save(np_filname,np_results)
def get_small_CD_data_generators(augument_data=False):
"""
Function which returns a train and a test data generator for the small CD dataset.
Input:
augument_data - if images are to be agumented
Output:
train_generator, validation generator - generator for fetching training
and validation images.
"""
base_dir = 'C:/Users/Simulator/Desktop/Martin Selin/layer_by_layer/small_cats_dogs'
train_dir = os.path.join(base_dir, 'train')
validation_dir = os.path.join(base_dir, 'validation')
test_dir = os.path.join(base_dir, 'test')
train_cats_dir = os.path.join(train_dir, 'cats')
train_dogs_dir = os.path.join(train_dir, 'dogs')
validation_cats_dir = os.path.join(validation_dir, 'cats')
validation_dogs_dir = os.path.join(validation_dir, 'dogs')
test_cats_dir = os.path.join(test_dir, 'cats')
test_dogs_dir = os.path.join(test_dir, 'dogs')
if(augument_data):
train_datagen = ImageDataGenerator(rescale=1./255,
rotation_range=40,
width_shift_range=0.2,
height_shift_range=0.2,
shear_range=0.2,
zoom_range=0.2,
horizontal_flip=True)
else:
train_datagen = ImageDataGenerator(rescale=1./255)
test_datagen = ImageDataGenerator(rescale=1./255)
train_generator = train_datagen.flow_from_directory(
# This is the target directory
train_dir,
# All images will be resized to 150x150
target_size=(150, 150),
batch_size=20,
# Since we use binary_crossentropy loss, we need binary labels
class_mode='binary')
validation_generator = test_datagen.flow_from_directory(
validation_dir,
target_size=(150, 150),
batch_size=20,
class_mode='binary')
return train_generator,validation_generator