Tools for OAPDF Project

Need python module:

• requests : need it to load web and stop redirection.
  Install: pip install requests
• pdfminer : need it to parse pdf file. Install: pip install pdfminer

• modifyXML.py: To deal with nonsense chars in "Notes" column, reserve Time Cited information; modify improper doi format (remove DOI:, litter case)
• prepareDOI.py: To pre-process doi number for getPDF.py script.
• getPDF.py: Search PDF for endnote XML DOI records based on scihub.
  Save the doi number in a file (one doi per line) and use the file as script input.
  Each file save as "10.1021_ci111111a.pdf" in current directory. You have to move the valid file to "Done" Directory and use addPDF.py.
• addPDF.py: Put found PDF in "Done" Directory, Some pdf don't want to search anymore in "Accept".
  Give a endnote XML as input. Move the PDF to a directory based on doi-paper number. A new xml file will be generated.
  Move all the directories in "Done" to "Endnote library.Data/PDF" and import the new xml file. You may delete old records firstly.
• checkdone.sh: Use input file in getPDF.py (saving doi numbers) as input
  and generated a "not.txt" file saving doi not found.