chimera

IMP

matplotlib

1 - Run "run_genome_maxd.sh" to get models with different max distances.

2 - Run "Calculate_best_maxd.py" to get the optimum max distances.

3 - Pass as a parameter the optimum max distance to "run_genome_zscores.sh"

4 - Run "calculate_heatmap_difference.py" to get the optimum zscores.

5 - With the max distance and the upper and lower z-scores, modeling can start. Run "run_genome_sampling.sh" with those parameters

6 - run "GenomeAnalysis.py"

7- run "GenomeClustering.py"

8- run "Tads.py"