/
fit_MLFKT_adaptive_transition_difficulty_model.py
executable file
·179 lines (146 loc) · 5.45 KB
/
fit_MLFKT_adaptive_transition_difficulty_model.py
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
""" Run an MCMC fit on the MLFKT model (maybe in BKT mode though)
Does all the train/test splitting and calculates RMSE over post test
"""
from Metropolis.mcmc_sampler import MCMCSampler
from Metropolis.mlfkt_adaptive_transition_difficulty_model import MLFKTAdaptTransitionDifficultyModel
import sys, json, time, random, os, math
import numpy as np
print "usage: python fit_MLFKT_adaptive_transition_difficulty_model.py burnin iterations k(for 1/k test split) bkt(y/n) skills num_intermediate_states iterations L1/L2"
iterz = int(sys.argv[7])
for it in range(iterz):
skill = sys.argv[5]
intermediate_states = int(sys.argv[6])
total_states = intermediate_states + 2
fname = skill.replace(" ","_")
fname = fname.replace("\"","")
"""
try:
os.system("python bkt_data_split.py " + fname + ".csv \"" + skill + "\"")
except Exception as e:
print str(e)
pass
"""
#time.sleep(1)
#load observations
X = np.loadtxt(open("dump/observations_" + fname + ".csv","rb"),delimiter=",")
#load problem IDs for these observations
P = np.loadtxt(open("dump/problems_" + fname + ".csv","rb"),delimiter=",")
start = time.time()
k = int(sys.argv[3])
#split 1/kth into test set
N = X.shape[0]
Xtest = []
Ptest = []
Xnew = []
Pnew = []
for c in range(N):
if c % k == 0:#random.random() < 1 / (k+0.0):
Xtest.append(X[c,:])
Ptest.append(P[c,:])
else:
Xnew.append(X[c,:])
Pnew.append(P[c,:])
X = Xnew
P = Pnew
Xtest = np.array(Xtest)
Ptest = np.array(Ptest)
X = np.array(X)
P = np.array(P)
print str(Xtest.shape[0]) + " test sequences"
print str(X.shape[0]) + " training sequences"
if '1' in sys.argv[8]:
L1 = True
else:
L1 = False
if 'y' in sys.argv[4]:
model = MLFKTAdaptTransitionDifficultyModel(X, P, intermediate_states, 0, L1)
else:
model = MLFKTAdaptTransitionDifficultyModel(X, P, intermediate_states, 0.1, L1)
mcmc = MCMCSampler(model, 0.15)
burn = int(sys.argv[1])
for c in range(20):
mcmc.burnin(int(math.ceil((burn+0.0) / 20)))
print("finished burn-in #: " + str((c+1)*burn/20))
num_iterations = int(sys.argv[2])
loop = 20
per_loop = int(math.ceil((num_iterations+0.0) / loop))
for c in range(loop):
a = time.time()
mcmc.MH(per_loop)
b = time.time()
print("finished iteration: " + str((c+1)*per_loop) + " in " + str(int(b-a)) + " seconds")
end = time.time()
print("Finished burnin and " + str(num_iterations) + " iterations in " + str(int(end-start)) + " seconds.")
folder = "plots_" + fname
#plotting samples will also load the MAP estimates
#mcmc.plot_samples(folder + "/", str(num_iterations) + '_iterations')
#load up test data and run predictions
model.load_test_split(Xtest, Ptest)
pred = model.get_predictions()
num = model.get_num_predictions()
mast = model.get_mastery()
err = pred - Xtest
rmse = np.sqrt(np.sum(err**2)/num)
errl = np.zeros(num)
predl = np.zeros(num)
mastl = np.zeros(num)
xtestl = np.zeros(num)
i = 0
for n in range(pred.shape[0]):
for t in range(pred.shape[1]):
if pred[n][t] == -1:
break
errl[i] = err[n][t]
predl[i] = pred[n][t]
mastl[i] = mast[n][t]
xtestl[i] = Xtest[n][t]
i += 1
from matplotlib import pyplot as plt
plt.hist(np.array([predl]).T, 30)
plt.savefig(folder + "/Predictions_" + str(num_iterations) + '_iterations')
plt.clf()
plt.hist(np.array([errl]).T, 30)
plt.savefig(folder + "/Errors_" + str(num_iterations) + '_iterations')
plt.clf()
print "RMSE:\t" + str(rmse)
f = open(folder + "/RMSE" + str(num_iterations) + '_iterations', "w+")
f.write("RMSE: " + str(rmse) + "\n\n\nErrors: (prediction - observation)\n\n")
for c in range(err.shape[0]):
f.write(str(err[c,:]) + '\n')
f.close()
f = open(folder + "/mastery" + str(num_iterations) + '_iterations', "w+")
for c in range(num):
f.write(str(mastl[c]) + ',' + str(predl[c]) + ', ' + str(xtestl[c]) + '\n')
f.close()
#mcmc.save_model(folder + "/" + str(num_iterations) + '_iterations.model')
if 'y' in sys.argv[4]:
fname += '_bkt'
if L1:
fname += '_L1'
rmsefname = 'dump/RMSE_' + fname + "_adapt_transdiff_" + str(total_states) + "states_" + str(num_iterations) +"iter" + '.json'
if os.path.exists(rmsefname):
rmsel = json.load(open(rmsefname,"r"))
else:
rmsel = []
rmsel.append(rmse)
json.dump(rmsel, open(rmsefname,"w"))
paramfname = 'dump/PARAMS_' + fname + "_adapt_transdiff_" + str(total_states) + "states_" + str(num_iterations) +"iter" + '.json'
if os.path.exists(paramfname):
paraml = json.load(open(paramfname,"r"))
else:
paraml = []
p = model.get_parameters()
pdict = {}
for id, param in p.iteritems():
if "D_" in id:
pdict[id] = param.get()
if "Tf" in id:
pdict[id] = param.get()
if "Tr" in id:
pdict[id] = param.get()
#pdict['Trans'] = list( [list(x) for x in model.make_transitions()] )
pdict['Pi'] = list(model.make_initial())
model.emission_mask[0] = False
pdict['Emit'] = list( [list(x) for x in model.make_emissions(0,0)] )
paraml.append(pdict)
json.dump(paraml, open(paramfname,"w"))