Tool to identify mutation clusters in the 3D structures of proteins from MAF files

D : Directory [~]: Data File

• > DownloadMaf.py (Download Maff files / vertify their existance)
  • D Maf_Files
    • D Cancer type 1
      • [~] pipeline 1
      • [~] pipeline 2
      • [~] pipeline 3
      • [~] pipeline 4
    • D Cancer type n
      • [~] pipeline 1
• > GroupGenes.py (Create a set of dataframes for each gene for each pipeline) (TODO)
  • [~] gene_table.pkl
  • D Pipeline1
    • D Chr 1
      • [~] geneA.pkl
      • [~] geneB.pkl
• > Download_PDB (TODO)
  • D PDB_Files
    • D Chr 1
      • D GeneA
        • [~] Residue1.pdb
        • [~] Residue2.pdb

  Analysis:

  TODO