This project aims at implementing Biclustering methods to link genes with heterogeneous data using Mosek Python API.

Before you begin, ensure you have met the following requirements:

• You have installed a version of Python > 2.6.

• SDP resolution by Mosek
• K-means constrained from "Data Clustering with Cluster Size Constraints Usinga Modifiedk-means Algorithm" article by Nuwan Ganganath†, Chi-Tsun Cheng, and Chi K. Tse.

To use the SDP biclustering algorithm, follow these steps:

To load your data:

Replace I=Instance.LoadInstance("save3.txt") with your text file representing your clusters matrixes in SDP_21.py

To run the algorithm on your data:

python SDP_21.py 

Authors :

• Alexis Le Glaunec
• Geoffroy Zardi

This project was realized in collaboration with researchers from the university of Evry :

• Farida Zehraoui
• Eric Angel