Algorithms for fast alignment of structures in finite and periodic systems.

1. fortran compiler
2. fftw
3. lapack

1. numpy: We use numpy everywhere for doing numerical work. It also installs f2py which is used to compile fortran code into modules callable by python.

2. scipy: For some of the optimizers and various scientific tools

3. hungarian: For permutational alignment

To compile f2py modules run

$ ./compile.sh