Contains ImageJ and Python3 script for removing background from microscopy images.

This script is removing background from microscopy images. It works by subtracting background image from all images in a folder. The background image should have background in its name, and be in the same folder as the rest of the images. The background image should be taken using the same settings as the rest of the images but without any object. It contain only information about any peripheral darkening (vignetting), spots on the objective and background that are going to be present on all the images. The script will save the cleaned images in destination folder as png files with the same name.

Analogous to the ImageJ script exept that is saving the images in the same format as the original ones. Is around 2x faster than ImageJ script